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Query: [M] COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDVNTVVEKFKSRQALIGIVGLGYVGLPLMLRYNAIGFDVLGIDIDDVKVDKLNAGQCYIEHIPQAKIAKARASGFEATTDFSRVSECDALILCVPTPLNKYREPDMSFVINTTDALKPYLRVGQVVSLESTTYPGTTEEELLPRVQEGGLVVGRDIYLVYSPEREDPGNPNFETRTIPKVIGGHTPQCLEVGIALYEQAIDRVVPVSSTKAAEMTKLLENIHRAVNIGLVNEMKIVADRMGIDIFEVVDAAATKPFGFTPYYPGPGLGGHCIPIDPFYLTWKAREYGLHTRFIELSGEVNQAMPEYVLGKLMDGLNEAGRALKGSRVLVLGIAYKKNVDDMRESPSVEIMELIEAKGGMVAYSDPHVPVFPKMREHHFELSSEPLTAENLARFDAVVLATDHDKFDYELIKAEAKLVVDSRGKYRSPAAHIIKALast
1 -52.200d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  24  1...............MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQRQTGRLSGTTDFKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSTVVVRSTVLPGTVNNVVIPLIEDSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGEDKQTGDLLEEIYRELDAPIIRKT................................................................................................................................................................................................................................... 202
2 -46.100d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  20  1...............MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLD-SKAAYKEAELVIIATPTNYNSRINYFDTQETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKF---------QTDRIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALSAAKKNNVPVLIM............................................................................................................................................................................................................................ 195
3 -43.700d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  26  1..................................................................................................................................................................................................................VEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ................................................................................................................................... 98
4 -42.100d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  22  1..................................................................................................................................................................................................................ASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDIGMHYNNPSFGYGGYSLPKDTKQLL--ANYNNIPQTLIEAIVSSNNVRKSYI............................................................................................................................... 98
5 -34.100d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  22  1.........................................................................................................................................................................................................................................................................................................................VQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVSKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNTPSGKKLVDLVGFMPHTTTAQAEG 133
6 -30.100d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  15  1.....................................................................................................................................................................................................................................................................................................................AKQIINVLKEQ--ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESED----QSVLVNDLENFKKQANIIVTNRYDNELQDVKNK------VYSRDIFGRD....... 108
7 -17.600d3g0oa1 c.2.1.0 (A:6-169) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  17  1..............DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA----------------EGACGAAASAREFAGVVDALVILVVNA------AQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTAL-------NLNMLDAP----SGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISD.................................................................................................................................................................................................................................. 164
8 -16.400d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1................PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------------AGEQVVSSPADVAEKADRIITMLPTS------INAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKM-------GAVFMDAP----SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGA.................................................................................................................................................................................................................................. 161
9 -16.400d2uyya1 c.2.1.0 (A:262-429) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1.........SITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLF-----------------IQEGARLGRTPAEVVSTCDITFACVSDP------KAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFL--EAPVSGNQQLSNDGMLV--------ILAAGDRGLYEDCSSCFQAMGKTSFFLGE.................................................................................................................................................................................................................................. 168
10 -16.100d3ws7a1 c.2.1.0 (A:1-161) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  18  1...............MRVGFIGLGIMGGPMATHLLKAGFLAAVYNRTREKTKPF-----------------AEAGVYVAESPADLAKRVDVVIVMVSDA------PDVEQVLFGPSGVVEGARPGLIVVDMSTNSPDWARKFAERLAQY-------GIEFLDAP----TGGQKGAIEGTLTIMVGGKEELFHRLLPIFKAMGRDIVYM.................................................................................................................................................................................................................................... 160
11 -16.100d5je8a1 c.2.1.0 (A:1-163) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  17  2...............KKIGFIGLGNMGLPMSKNLVKSGYTVYGVDLNKEAEASFEK-----------------EGGIIGLSISKLAETCDVVFTSLPSP------RAVEAVYFGAEGLFENGHSNVVFIDTSTVSPQLNKQLEEAAKEK-------KVDFLAAP----SGGVIGAENRTLTFMVGGSKDVYEKTESIMGVLGANIFHVSE.................................................................................................................................................................................................................................. 163
12 -15.100d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  2..............QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-------------AKGTKVVGAQSLKEMVSKLKKPRRIILLV------KAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG------GSGVSGGEEGARYGPS---------LMPGGNKEAWPHIKTIFQGI........................................................................................................................................................................................................................................... 159
13 -14.900d4dlla1 c.2.1.0 (A:29-190) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  12  2.............YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------------LGATIHEQARAAARDADIVVSMLENGAVVQD-------VLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL-------GIAHLDTP----SGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF........................................................................................................................................................................................................................................... 155
14 -14.300d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  1...............EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG-------------------SEAVPLERVAEARVIFTCLPTT---------REVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK-------GVTYLDAP----SGGTSGAEAGTLTVMLGGPEEAVERVRPFLA............................................................................................................................................................................................................................................. 146
15 -13.700d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}  ali model 3D-neighbors follow..  16  1..............SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA--IIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPA----------IHHASIAANIASYISEGQLIILNPGATGGALE--FRKILRENGAPEVTIGETSSMLRSERPGQVIKGAMDFACLPAAKAGWALEQIGSVLPQY........................................................................................................................................................................................................................................... 180
16 -13.300d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  13.............QGRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPK-----------------VEEQGLDVDTPAEVAKWADVVMVLAP---------DTAQAEIFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADVAVAMVAPKGP---HLVRRQFVDGKGVPCLVA---VEQDPRGDGLALALSYAKAI........................................................................................................................................................................................................................................... 169
17 -13.300d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  1...............MIVSILGAGAMGSALSVPLVDNGNEVRGTEFDTEILKSISAGRE-----HPRLGVKLNGVEIFWPEQLKCLENAEVVLLGVST----------DGVLPVMSRILPYLKDQYIVLSKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE---VAKRMPTTVVFSSPSESSANKMKEIFET............................................................................................................................................................................................................................................ 171
18 -12.700d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  19  1...............MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL------------------EAGQDLSLLQTAKIIFLCTP----------IQLILPTLEKLIPHLSPTAIV-----TDVASVKTAIAEPASQLWSG-----FIGGHP------------------MAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIY............................................................................................................................................................................................................ 163
19 -12.500d4m1qa1 c.2.1.0 (A:3-144) automated matches {Bacillus selenitireducens [TaxId: 439292]}  ali model 3D-neighbors follow..  11  1............TKTSRVVIIGTGAVGSSYAFSMINQNVEMVLIDLDKRKTEG--------DAMDLNHGIPFGAPTKVWAGDYGDCKSADIVVITAGAAQKPGETKNANIFKGIVDQVMGSGFNGIFIIATNPV.............................................................................................................................................................................................................................................................................................................. 122
20 -12.400d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}  ali model 3D-neighbors follow..  23  1..............ARKIGIIGLGNVGAAVAHGLIAQGVDYVFIDANEAKVKADQIDFQ-------DAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTSSMVQSVGTNLKESGFHGVLVVISNPV.............................................................................................................................................................................................................................................................................................................. 125
21 -12.300d2v6ba1 c.2.1.0 (A:22-164) automated matches {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  12  1...............MKVGVVGTGFVGSTAAFALVLRGSELVLVDRDEDRAQA--------EAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQKPGESKNADIFRELVPQITRAAPDAVLLVTSNPV.............................................................................................................................................................................................................................................................................................................. 119
22 -12.300d1z82a1 c.2.1.0 (A:2-166) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  15  1..............EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHT-------SPYVEESKITVRATNDLEEIKKEDILVIAIPV--------------QYIREHLLRLPVKPSMVLNLS---GIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEE........................................................................................................................................................................................................................................................................... 132
23 -12.200d4ajjc1 c.2.1.0 (C:1-159) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  9  8...IVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLELALVDVIEDKLKGEMMDLQ-------HGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRNVNIFKFIIPNVVKYSPQCKLLIVSNPV.............................................................................................................................................................................................................................................................................................................. 139
24 -12.200d3nepx1 c.2.1.0 (X:22-163) automated matches {Salinibacter ruber [TaxId: 309807]}  ali model 3D-neighbors follow..  12  1...............MKVTVIGAGNVGATVAECVARQDVEVVMVDIKDGMPQG------KALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLPRSPGMSKNTEIVGGVTEQFVEGSPDSTIIVVANPL.............................................................................................................................................................................................................................................................................................................. 121
25 -11.900d1yjqa2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1...............MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN----------LVETDGSIFNESLTANDPDFLATSDLLLVTLKA----------WQVSDAVKSLASTLPVTTPILL------------------HNGM-----------------GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIQDGDYSYLADILQTVLPDVAWH.............................................................................................................................................................................................................. 166
26 -11.800d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  11  1............APKAKIVLVGSGMIGGVMATLIVQKNLDVVLFDIVKNMPHG------KALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKPLNNKIMIEIGGHIKKNCPNAFIIVVTNPV.............................................................................................................................................................................................................................................................................................................. 128
27 -11.700d3fr7a1 c.2.1.0 (A:86-307) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  11  39.............GIKQIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVKIGLRKGSKSFDEARAAGFTEE---SGTLGDIWETVSGSDLVLLLISD----------AAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFADVDGRATDVALGWSVALGSPFTFATT.................................................................................................................................................................................................................................. 222
28 -11.500d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  1...............MRVALLGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAA----------EYRRIAGDASITGMKNEDAAEACDIAVLTIP----------WEHAIDTARDLKNILREKIVVSPLVPVSRGSAAEIVAEVLESEKVV--SALHTIPAARFANLDEK----FDWDVPVCGDDDESKKVVMSLISEI--RPLDAGPLSNSRLVESLTPLILNIMRF.............................................................................................................................................................................................................. 201
29 -11.400d3k96a1 c.2.1.0 (A:3-180) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  14  3..............KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF----PETLKAYCDLASLEGVTDILIVVPS----------FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG---QVPMAVISGPSLATE---VAANLPTAVSLASNNSQFSKDLIERLHG............................................................................................................................................................................................................................................ 169
30 -11.300d4e12a1 c.2.1.0 (A:1-189) automated matches {Acinetobacter baylyi [TaxId: 202950]}  ali model 3D-neighbors follow..  14  6................NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGGIRYSDDLQAVKDADLVIEAVPE--------SLDLKRDIYTKLGELAPAKTIFATNSSTLLPSD---LVGYTGRGDKFLALHF---ANHVWVNN-----------EVMGTTDPEVYQQVVEFASAIGMVPIELKK.................................................................................................................................................................................................................................. 186
31 -11.300d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  21  2.......FKTINSDIHKIVIVGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------SILANADVVIVSVP----------INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGA---------VLGLHP-----GADIASMAKQVVVRCGRFPERYEWLLEQIQIW........................................................................................................................................................................................................................................... 145
32 -11.200d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}  ali model 3D-neighbors follow..  10  1..............PTKLAVIGAGAVGSTLAFAAAQRGIEIVLEDIAKERVEA------------QHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQKPGQSATVNILKAIMPNLVKVAPNAIYMLITNPV.............................................................................................................................................................................................................................................................................................................. 121
33 -11.000d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  14  1...............LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTE-----------------TSEEDVYSCPVVISAVTP----------GVALGAARRAGRHVRG--IYVDINNISPETVRMASSLIEKGGFVDAAI-------------GSVRRKGADIRIIASGRDAEEFMKLNRY............................................................................................................................................................................................................................................... 141
34 -10.600d4jcoa1 c.2.1.5 (A:22-162) automated matches {Haloarcula marismortui [TaxId: 2238]}  ali model 3D-neighbors follow..  10  1...............TKVSVVGAGTVGAAAGYNIALRDIEVVFVDIPDKE------DDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTDNAPIMEDIQSSLDEHNDDYISLTTSNPV.............................................................................................................................................................................................................................................................................................................. 122
35 -10.500d1evya2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}  ali model 3D-neighbors follow..  10  1........KDELLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL----ASNITFTSDVKAYNGAEIILFVIPT----------QFLRGFFEKSGGNLIAYAVLVCTKGIERSTLKFPAEIIGEFLP---SPLLSVLAGPSFAIE---VATGVFTCVSIASADINVARRLQRIMST............................................................................................................................................................................................................................................ 179
36 -10.500d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  1................VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------------VYGGKAATLEKHPELNGVVFVIVPD--------------RYIKTVANHLNLGDAVLVHCS---GFLSSEIFKKSGRASIHPNFSF--------SSLEKALEMKDQIVFGLEG-DERGLPIVKKIAEEISGKYFVIPSEK................................................................................................................................................................................................................................ 153
37 -10.400d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  6................HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAI---------ENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS---IANATTRQDRFAGLHF---FNP----------PVMKLVEVIKTTSQKTFESLVDFSKALGKHPVSCKD.................................................................................................................................................................................................................................. 190
38 -10.400d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}  ali model 3D-neighbors follow..  13  6................QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDK-MAEVLNGIRPTLSYGDFGNVDLVVEAV---------ENPKVKQAVLAEVENHVREDAILASNTSTISISL---LAKALKRPENFVGMHF---FNP----------HMMPLVEVIRGSSDLAVATTVAYAKKMGKNPIVVND.................................................................................................................................................................................................................................. 184
39 -10.200d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  16  1.............ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE--------VAKHDLVISLIPYTFHKKHVVTTSYVSPAMMELDQAAKDAGITVMEIGXYSAMAKLVGVPCAVAVKFVLDGTISDRGVLA............................................................................................................................................................................................................................................................................... 155
40 -9.730d3fi9a1 c.2.1.0 (A:2-147) automated matches {Porphyromonas gingivalis [TaxId: 431947]}  ali model 3D-neighbors follow..  9  4.............TEEKLTIVGAGMIGSNMAQTAAMMRLNLCLYDPFAVGLEGVA--------EEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTGNAEIAAQLGKDIKSYCPDCKHVIIIFN............................................................................................................................................................................................................................................................................................................... 124
41 -9.630d4j0ea1 c.2.1.0 (A:1-198) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  11  13................NVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRSKKQK--GTDKEKSDFVTLTMSRIKTCNNVTAVADADLIIEAA---------ENIDLKRGIFAQIEQSCKKDSILTTNTSSFLLED---VAKGLQDKTRFGGLHF---FNP----------PVMKLLEVIRSTSDETYATLIKFGTAVGKTTVACKD.................................................................................................................................................................................................................................. 196
42 -9.610d3g0oa2 a.100.1.0 (A:170-292) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  14  1.................................................................................................................................................................................................................TPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFE-TPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNM....................................................................................................................................... 102
43 -9.430d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  15  1...............MKVTIIGAGRVGSATALLLAKEPFDLVLIGREHSINKL--EGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSTNAKIVGKYAKKIAEICDTKIFVITNPV............................................................................................................................................................................................................................................................................................................... 125
44 -9.420d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  21  20............KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFKNNINIVTFADVVEIKKVSDKNLSILSDGRIYEHFDHVIYCV.................................................................................................................................................................................................................................................................................................................................................... 117
45 -9.330d5je8a2 a.100.1.0 (A:164-291) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  19  1.................................................................................................................................................................................................................QIDSGTTVKLINNLLIGFYTAGVSEALTLAKKNNMDLDKMFDILNVSYGQSRIYE-EPGFTVNLLKKDLGFAVDLAKESELHLPVSEMLLNV....................................................................................................................................... 103
46 -9.320d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  14  3................NVLIVGVGFMGGSFAKSLRRSGFKIYGYDINPESISKAVD--------------LGIIDEGTTSIAKVEDFSPDFVMLSSP----------VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---------FVGGHP------------------IAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVE............................................................................................................................................................................................................ 169
47 -9.110d3ws7a2 a.100.1.0 (A:162-283) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  21  4....................................................................................................................................................................................................................YGQAMKLVNQVVVALNTVAMVEGLKLAKALGLDMDKVAEVLTRGAARSGAIE-SPGFKAEHLKKDLGYVLEEARKRGVKLPGAELAYEL....................................................................................................................................... 102
48 -9.030d1teaa4 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  20  1.................................................................................................................................................................................................................DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD-KPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEM....................................................................................................................................... 102
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.