current user: public
If you have questions about the server, please let us know.

Query: [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350
# Score Template Links and tools%idFirst MIVIKFRGRHRLIRRVSGQVYLWLAIFIFGASSAVTRKLTEIGARHFIDGRNPISLCNVLFVGNLCALMVMLLIYSRQWNKATLTQLSKKDWLGLTAVAILSGALAPGLIFHALSLTGVNNVILVGRLEPTLALALSVWLLKEQINFGEFIGAIAAFIGVILTIILQPPVSDMMNMGGWQLGLGEFFVAAGSVALAISTIIGKKYLTHIPLGIYSIFRTALGTVIFFFIALVLYGREHFADVFSPFLWQWMFLYGGVIVVVGQSFWLIGLKTSTVSTASLVASFTPIAGIVAAYFILSEVPTVAQYLGGGLIMLGIFLSQISKSRQTSHKSPIASTPAEQKVEMDMGFKGMLast
1 -5.970d2jo1a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  22.................................................................................................................................................................................................................................................................................................................VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGTFRSSIR.. 65
2 -5.110d2jp3a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD4 (CHIF) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  23.................................................................................................................................................................................................................................................................................................................IFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVTPLITPGS.... 64
3 -4.570d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}  ali model 3D-neighbors follow..  12  1.................................................................................................................................................................................................................................................................................AAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGL 78
4 -4.430d2x9aa_ b.37.1.0 (A:) automated matches {Enterobacteria phage [TaxId: 10868]}  ali model 3D-neighbors follow..  11  1....................................................................................................................................................................................................................................................................................TTDAECLSKPAFDGTLSNVWKEGDSRYANFENCIYELSGIGIGYDNDTSWNGHWTPVRAAD.............. 61
5 -4.430d2cfqa_ f.38.1.2 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  139..........................................................................................EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKALELFRQPKLWFLSLYVIGVSCTYDVFDQTSFFATGEQGTRVFGYVTTM-GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF-----KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYEAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA............ 417
6 -4.150d1xu6a1 g.16.3.1 (A:359-433) Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain {Trypanosoma brucei brucei [TaxId: 5702]}  ali model 3D-neighbors follow..  9  43...............................................................................................................................................................................................................................................................................................................................NKKCTLDKEEAKKVADETAKDGKTGNTNTTG. 73
7 -4.090d4c3hg2 b.40.4.5 (G:127-316) RNA polymerase I subunit A43, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  103........................................................................................................................................................................................................................................................................................................LRFTVRNVHTTGRVVSVDGTLISDADEEGNGYNSSRSQAESLPIVSNKKIVFDD. 156
8 -4.020d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  25........................................................................................................................................................FLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN----------IPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSI-MIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI..... 216
9 -3.970d2xg5a2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  8.................................................................................................................LILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDY----GGRPVLSFICNGSRCSVKKE.................................................................................................................................................... 93
10 -3.930d6eida_ f.13.1.0 (A:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  10  18......................................................TASNVLQWLAAGFSILLLMFYAYQTWKSTCGWEE----IYVCAIEMVKVILEFFFEFKNPSMLYLATGHRVLLTCPVILIHLSNLTGLSNDYSRRTMGLLVS--DIGTIVWGATSAMATGYVKVIFFCLG--LCYGANTFFHAAKAYIEGYHTVPKGRCRQVVTGMAWLFFVS-----------------------GMF-------ILFILGPEGFGVLSVYGSTVGHTIIDLMSNCWGLLGH...................................................... 233
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.