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Query: [E] COG0786 Na+/glutamate symporter, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNQIISIGALESFLIAISVLFLGHFINAKLPILTKFNIPEPIVGGLIVACVITALHFHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIQNGVGVSLAAGLGLDPLLGLIAGSITLSGGHGTGAAWANTFAENYGLANTLEIAMASATFGLIIGGIIGSPVAQKLVDKHGIESEYGRGTQTHSRFPELVTYNEYEEDKVTAKKVIEILFILLICVTGAKYLEAWVKTFEIRWLMIPDFVYALFIGVFITNLLEVTKLRKVDAETVDILGTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISAGHCGFGLGATPTAVMNMGSVVKRFGPSPQAFMVVPIVGAFFIDIVNLIILQGYISFLGLast
1 -7.130d1rewa_ g.17.1.2 (A:) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  9............................................................................................................................................................................................................................................................................................................................................YVDFSDVGPGYHA-FYCHGECPFPLADNSTNHAIVQTLVNSVNSKIPKACCVPTISMLYLDENEKVVLKNYQDMV. 96
2 -4.810d5e4ga_ g.17.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  14......................................................................................................................................................................................................................................................................................................................................CCRYPLTVDFEAFGWDW-KANYCSGQCEYMF---MQKYPHTHLVQQANPRGSAGPCCTPTINMLYFNDKQQIIYGKIPGMV. 101
3 -4.800d1tbfa_ a.211.1.2 (A:) cGMP-specific 3`,5`-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  38..................TALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE-------ILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI------AELVATEFFDQGDRERKEL---------NIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLD................................................................................................. 312
4 -4.760d1bhua_ b.11.1.3 (A:) Streptomyces metalloproteinase inhibitor, SMPI {Streptomyces nigrescens [TaxId: 1920]}  ali model 3D-neighbors follow..  25  27........................................................................................................................................................................................................................................................................................................................................................SDMEKAGTDGVKLPASARSFANGTHFTLRYGPARKVTCV......................... 65
5 -4.620d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  1.............................................................................................................................................................................................................................................................................................................MQVSVETTQGLGRRVTITIAADSI-----------TAVKSELVNVAKKVRIDGLRKGKVPMNI-----VAQRYGASVRQDVLGDLMSRNFIDAIIKEKIN....... 85
6 -4.520d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  7  4......................................................................................................................................................................................................................................................................................................................................CVLTAIHLNVTDLGLGYETFRYCSGSCEAAETMYDKILKNLSRSRRLTSDKVGQACCRPVFDDDLSFLDDSLVYHILRKHSA 91
7 -4.280d3wvta1 g.24.1.0 (A:40-97) automated matches {Horse (Equus caballus) [TaxId: 9796]}  ali model 3D-neighbors follow..  16  2................................................................................................................................................................................................................................................................................................................................................QCKEEEYPVGTECCPKCSPGYRVKQACGELTGTVCV------------PCAPRTFSAHLNGL.......... 51
8 -4.230d1ppqa1 g.18.1.1 (A:961-1024) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  21.....................................................................................................................................................................................................................................................................................................................................................QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIP....................... 64
9 -4.200d1dkva5 b.14.1.0 (A:356-513) automated matches {Homo sapiens}  ali model 3D-neighbors follow..  26  105......................................................................................................................................................................................................................................................................................................................................................................ERSDTFINLREVLNRFKLPPGEYILVPSTGDFCIRVFS............ 148
10 -4.010d3ceia2 d.44.1.0 (A:85-213) automated matches {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  13  7....................................................................................................................................................................................................................................................................................................................................LKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVAYYIDHKNPVYLEKFYGHI. 97
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.