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Query: [C] COG1038 Pyruvate carboxylase, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVLLLYSAVQQNSVLACGETVLKISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLSLHRFKADESYQVGRGPHLAKDMGPIESYLSIEEVIRVAKLSGADAIHPGYGLLSESPEFVEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVPATNPLPDDIAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILEGAAIGTAESGVPKQEDIRLNGHALQCRITTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYTGAVITRYYDPLLVKVTAWAPEPDEAISRMDRALREFRIRGVATNLTFLEAIIGHDSFRNNTYTTRFIDSTPELFAQVKRQDRATKLLTYLADVTVNGHPETKGRAKPADKAAKPIVPYIDAPTPDGTKQLLDKLGPKGFADWMRNEKRVLVTDTTMRDGHQSLLATRVRTHDIARVASVYSKALPQLLSLECWGGATFDVSMRFLTEDPWERLSLIREGAPNLLLQMLLRGANGVGYKNYPDNVVKYFVRQAARGGVDLFRVFDCLNWVENMRVSMDAIAEENKLCEATICYTGDLLNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGISAATVLAAVDAGVDAVDAAMDAFSGNTSQPCLGSIVEALSGSERDTGLDTEWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLESRWHEVAQAYADANRMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVENPDREVSFPDSVVSMLKGDLGQSPGGWPEALQKKALKGEKPYTVRPGSLLEDADLDAERKVIETKLERKVDDFEFASYLMYPKVFTDFALTAETYGPVSVLPTHAYFYGMEDGEELFADIERGKTLVIVNQASSGIDDKGMVTVFFEINGQPRRIKVPDRAHGASGSAVRRKAEPGNASHIGAPMPGVISRVFINQGQEVKAGDVLLSIEAMKMETALHAERDGKIAEVLVKPGDQIDAKDLLISYAELast
1 -73.600d2w70a2 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  47  1...............................................................................................................................................DKVSAIAAMKKAGVPCVPGSDGPLDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSI------KQEEVHV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 216
2 -70.400d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  34  1..............................................................................................................................................GDKISSTIVAQSAKVPCIPWSKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPI.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 266
3 -54.400d2w70a1 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  47  1......................MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAP-------SVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 114
4 -49.200d2dzda3 b.84.2.0 (A:340-461) automated matches {Geobacillus thermodenitrificans [TaxId: 33940]}  ali model 3D-neighbors follow..  56  1.............................................................................................................................................................................................................................................................................................................................................................................INGYAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPKFLSGEYDTSFIDTTPELFVF............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 122
5 -45.600d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  1...............................................................................................................................................DRRRFDVAMKKIGLETARSGI--AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEIC----ARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLD-----------------ELMNDITGGRTPASFEPSIDYV----VTKIPRFNFEKFAG-ANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGL.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 275
6 -45.300d2w70a3 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  1..............................................................................................................................................................................................................................................................................................................................................................................RGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 116
7 -44.300d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  3....................................................................................................................................................QHAVERLKLKQPAN--ATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYF----QTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGV----TKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMR---STGEVMGVGRTFAEA------FAKAQLG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 258
8 -43.400d5mlka3 b.84.2.0 (A:340-465) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  36  1..............................................................................................................................................................................................................................................................................................................................................................................RGHAIEFRINGEDAGRNFLPAPGPVTKFHPPSGPGVRVDSGV-ETGSVIGGQFDSMLAKLIVHGADRAEALARARRALNEFGVEGLATVIPFHRAVVSDPAFIGDSVHTRWIETE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 118
9 -43.000d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}  ali model 3D-neighbors follow..  39  5.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAA--GYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYT-------SPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV-DTSIFKSQ........................................................................................................................................................................................................................................................................................................................... 303
10 -41.300d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  26  1..............................................................................................................................................................................................................................................................................................................................................................................KGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSV-GNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGFRTTVEYLIKLLETEDFEDNTITTGWLDDL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 115
11 -38.600d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  23  29......EESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETMATPEDLEANAEYIRMADQYIEVPGGTNN-------NNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKVIFIGPPGNAMRSL........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 170
12 -34.600d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  3................................................................................................................................................EGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGG--RAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC----APVGHRQEDGDYRESWQPQMSPLALERAQEIARKVVLALGGYGLFGVELFVC--GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIR................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 204
13 -31.800d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1...............................................................................................................................................DRLTQKQLFDKLHLPTAPWQL--LAERSEWPAVFDRLGELAIVKRRTGGDGRGQWRLRANETE----------QLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVF-YPLTHNLHQDGILRTSVAFPQ-ANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQ--GLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 197
14 -29.200d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}  ali model 3D-neighbors follow..  38  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG. 77
15 -23.300d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  13  1...............................................................................................................................................DRNLERKWLKKAGIRV-----------PEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRGRIPAKDQLEFDMDITIVLRESLLMDVIEAGERVVKAA-LWGPFCLEGVFTPD-LEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDMLE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 231
16 -19.700d2zdha2 d.142.1.0 (A:115-319) automated matches {Thermus thermophilus [TaxId: 300852]}  ali model 3D-neighbors follow..  18  1...............................................................................................................................................DKDLSKRVLAQAGVPVVPWV-----AVRKGEPPVVPFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR-------DEKAVVEKALSPVRELEVGVLGNVFGEASPVGE-DYETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELYLNELNT-----YPRLFEAGGVELLRRLVELA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 203
17 -18.500d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}  ali model 3D-neighbors follow..  17  1...............................................................................................................................................DKALTKELLTVNGIRNTKYIVVDPESANNWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ-------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDFLLD-ENNVPYLGEPNT-----FKRLWDYSDIKLVDMLIDYG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 217
18 -18.300d4fu0a2 d.142.1.0 (A:139-348) automated matches {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  17  1...............................................................................................................................................DKDRAHKLVSLAGISVPKSV-KRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE-------DTEVIVEETIN-GFEVGCAVLGIDELIVGRVDE-DYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT-PSGEIVFNEVNT-----YPNMMKGIGLQMLDKLIGLY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 209
19 -18.200d4c5ca2 d.142.1.1 (A:97-306) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  20  1................................................................................................................................................KLRSKLLWQGAGLPVLTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-------DEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSDYEAKYLSDETQYFCPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANT-----VPMAARQAGMQLVVRILELAD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 210
20 -18.000d4lrsa1 c.1.10.0 (A:10-294) automated matches {Thermomonospora curvata [TaxId: 471852]}  ali model 3D-neighbors follow..  17  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................APRVRITDSTLRDGSHA--AHQFTEEQVRATVHALDAA--GVEVIEV-GLGGSSFNYGFSAVDEIDLVAAAVDEAVNAKIAVLLL----------PGVGTVRDLKRAHDAGASVARIATHCTEADVSCQHFAAARELGMETVGFLMLA--------HRIGPEELARQARIMVDAGAQCVYVVDSAGALVLSDVQARVQALVREIEAQVGFHGHQNLSLGVANSVLAYQNGARQIDGALCALGAGAGNSPTEILAATFERLNIETGVNVQAALAAAE...................................................................................................................................................................................................................................................................................................................................................... 260
21 -17.500d3r23a1 d.142.1.0 (A:94-303) automated matches {Bacillus anthracis [TaxId: 198094]}  ali model 3D-neighbors follow..  14  1...............................................................................................................................................DKNISKKILRYEGIET-PDWIELTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIKG-EEITCSIFDGKQLPIISIRHAA-DYNAKYDDASTIEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVK--DGIPYVMEVNT-----LPKSADAAGIKLLDMIIETS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 202
22 -17.500d3vpda2 d.142.1.7 (A:89-281) automated matches {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  22  1................................................................................................................................................KWATSVALAKAGLP-QPKT--LATDREEALRLMEAFGYPVVLKPVIGSWGRLLAKVTDRAAAEALLEHK--EVLGGFQHQLFYIQEYVEKPRDIRVFVVG---ERAIAAIYRRSAHWITNTARGGQAENCPLTEEIA----RLSVGAAEAVGGGVVA-VDLFESER--GLLVNEVNHTMEFKN--SVHTTGVDIPGEILRYAWEV......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 190
23 -17.300d3tqta2 d.142.1.0 (A:140-371) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  12  1...............................................................................................................................................EKDLTKTVLRAGGIPVVD-SPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR-------DDRLMVEPRIR-GREIECAVLGNGAPKASLPGE-SYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVT-PNNKVLVNEINT-----YPKMWEASGLNLLDQLIELAIDRHQEQQKLIRCYEVKA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 230
24 -16.900d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  31  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EISGHIVRSPMVGTFYRTFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE. 80
25 -15.800d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  2......................................................................................................................................SLESIYNFCDKPWVFAQMVAIFKTLGGEK--EQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIG---NNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWV---DACSEMFGGLDICA-VKAVHGKD-GKDYIFEVMDCLIGEHQVEDRQLITDLVISKMN.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 202
26 -15.700d2k7va1 b.84.1.1 (A:2-89) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  22  3.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE. 70
27 -14.100d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}  ali model 3D-neighbors follow..  14  2..................................................................................................................................................LQDKALEGAGIPR----------VEVVEPEDAKPDELYFVRIEGPRGGSGHFIVEGSELEERLSTL----------EEPYRVERFIPGVYLYVHFFYSPILERLLGVDERVLIADGNARWPVKPLPAIALRESLLPQLYDYGLAFVRTMGVIGPFALHFAYD---GSFKAIGIASRIDGGSNADHWYSEL---YWGERLSMGRRIARELRLAEEEDRLE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 209
28 -13.700d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  1...............................................................................................................................................SKVYAKRFMKKYGIRT--ARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGN---ELSAMAVVNGRNFVI----LPFVRDYKRLMDWGPVEIPSDTIKEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLDPETEVIVTLNPEGFVNAVLEGYRGGKME...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 215
29 -13.600d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  9............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DRAPLWCAVDLRDGNQA-LIDPMSPARKRRMFDLLVRM----------GYKEIEVGFPSASQTDFDFVREIIEQ------GAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILEVQAIATDGARKCVEQAAKYPGTQ-EYSPESYTGTELEYAKQVCDAVGEVIAIIFNLPATVEMTTPNVYADSIEWMSRNLSVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGD................................................................................................................................................................................................................................................................................................................................... 309
30 -13.400d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  1...............................................................................................................................................SKAFTKDFLARHKIPT--AEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGE---EASFIVMVDGEHVLP----MATSQDHKRVGDYSPAPVVTDDTMERIIWPTVKGMAAEGNTYTGFL--LMIDKQGNPKVIEFNCRFDLETQPIMLRMKSDLVELCLAACESK......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 215
31 -13.000d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  30  16........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
32 -12.600d2l5ta_ b.84.1.1 (A:) automated matches {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  21  16........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID. 76
33 -11.600d1k8ma1 b.84.1.1 (A:1-85) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  19........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE. 79
34 -10.700d4c2ma_ e.29.1.2 (A:) RNA polymerase I subunit A190 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  334VLQYVFHSRPNLSRKLVKADSFFMDVLVVP--SKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQG-PGVKQALEKKEMGKRVNYAARSVISPDPNI-------------TNEIGVPPV---------------FAVKLTYPEPVQAVINGPDKGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHRHIK-------NRDVV-LMNRQPTLHK---------AS-MMGHKVRVLPNEKTLRL----HYANTGAYNADFDGDEMNMHFAEALNLANTDSQYLTPTSGSPVRGLQDHISAGVWLTSKDSFFTREQYQQYDGHTTRSKIVTLPPT--FKPYTGKITTVKGSLENEVLFKDGALLCGILDKSQYGASKYGIVVYGPEVAKVLSVLGRLFTNYTATAFTCGMDDLTDILKTSVDTGREAAAEVTNLDKD------TPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVKPYETDAMARFYSGIKPQEYYFHCMAGREIDTAVKYLQRCLTKQLEGVH-----VSYDNSIRDAD------------GTLVQFMYGDAIDITKE-EHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLELMQLKYMRSLINPGEAVGIIASQSGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEV........................................................................................................................................................................................................................................................................................................................................................ 1266
35 -10.200d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1..............................................................................................................................................NEKLFTAWFSDLTPETLV------TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIA----ETLTEHGTRYCMAQNYLPAIKDGDKRVL----GEPVPYCLARIPQGRGNLAAGGRGEPRPLTESDWK-IARQIGPTLKEKGLIFVG-----LDIIGDRLTEINVTSPTCIRE--IEAEFPVSITGMLMDAIEAR......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 190
36 -9.640d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}  ali model 3D-neighbors follow..  26  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVMMGEYK----------RMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKK.............................................................................................................................................................................................................. 99
37 -9.200d2pnrc_ b.84.1.1 (C:) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  13........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRVPLGTPLCIIVE 75

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.