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Query: [C] COG1145 Ferredoxin, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHHSHHLEIYEKLREKLNKAPIGLPKTVSGVEKELLSVLFDEEEAKIAVHMPFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPVIVGFAETPFWPGPGKDPRQEKLARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDGMTYVQELLADKGRDPSGLFLast
1 -28.000d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  24  2.........................................................................................................................................................................................................................................................................................SFVNPEKCDGCKACEYICPNDLMTLDKEKMKANREPDMCWECYSCVKMCPQGAIDVRGYVDY......................... 69
2 -27.400d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  25  93................................................................................................................................................................................................................................................................................ELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAFDPETHLPTVTDTCTGCTLCLSVCPIDCIRMVSRTTPYEPKRGL.................. 173
3 -27.300d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  28  22....................................................................................................................................................................................................................................................................................DKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQ............................. 84
4 -25.500d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  25  10.....................................................................................................................................................................................................................................................................................AINVPQWVPENCIQCNQCAFVCPHSAILPVLAKERIQINTLDCMGCGNCADICPPKEKALVMQPLDTQRDAQ................... 106
5 -25.200d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}  ali model 3D-neighbors follow..  29  35......................................................................................................................................................................................................................................................................................GTIVGVDFDLCIADGSCINACPVNVFQWYDTPGADPVNEQACIFCMACVNVCPVAAIDVKP............................. 102
6 -24.200d4kt0c_ d.58.1.2 (C:) automated matches {Synechocystis sp. [TaxId: 1148]}  ali model 3D-neighbors follow..  20  3.........................................................................................................................................................................................................................................................................................SVKIYDTCIGCTQCVRACPLDVLEMVPWDGASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSM................... 76
7 -23.800d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  27  24............................................................................................................................................................................................................................................................................................GLEKCIGCSLCAAACPAYAIYVEPAENVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYS................... 102
8 -22.200d6fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  28  1.........................................................................................................................................................................................................................................................................................AFVVTDNCIKCKDCVEVCPVDCFYEGPNF--LVIHPDECIDCALCEPECPAQAIFSEDEVPED........................ 63
9 -21.200d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}  ali model 3D-neighbors follow..  36  1.........................................................................................................................................................................................................................................................................................AYVINEACISCGACEPECPVNAISSGDD--RYVIDADTCIDCGACAGVCPVDAPVQA.............................. 55
10 -20.600d2fgoa_ d.58.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  27  1.........................................................................................................................................................................................................................................................................................SLKITDDCINCDVCEPECPNGAISQGEEI--YVIDPNLCTECPQCQQVCPVDCIPLDDANVE......................... 66
11 -20.500d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  30  1.........................................................................................................................................................................................................................................................................................PHVICEPCIGVKSCVEVCPVECIY--DGGDQFYIHPEECIDCGACVPACPVNAIYPEEDVPEQ........................ 63
12 -19.400d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  18  15...........................................................................................................................................................................................................................................................................EHDQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEFRLQINAQNCVHCKTCDIKDPSQNINWVVPEG.......................... 93
13 -19.100d3mmca1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  1...............................................................................................................................................................................................................................................................................KDDIKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDGKE--LTIDNRECVRCMHCINKMPKALK................................. 62
14 -18.500d3c7bb6 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  29  9.............................................................................................................................................................................................................................................................................................EAIRKTCESTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPEN............................ 65
15 -18.500d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  3.............................................................................................................................................ETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKACACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDG--------------------CMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRV----YKCTLC-ACVKTCPTGAIHFGTKKEMLELAEQRVAKLK............. 203
16 -17.800d1y5ib_ d.58.1.5 (B:) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1.................................................................................................................................................................MKIRSQVGMVLNLDKCIGCHTCTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKSQPIARPRSLITGERACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSE....................... 242
17 -17.200d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  32  7..................................................................................................................................................................................................................................................................................VDERSKSLTVDRTKCLLCGRCVNACGTYAMKFLNKNGKTIIDDTNCLLCGQCIIACPVAALS................................ 80
18 -16.900d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  10  5..........................................................................................................................................................................FVDTTRCTACRGCACKQWHGNPATPTENTGFHQNPPDFNFHTYKLVRMHEQEIDGRIDWLFFPDQ-----------------CRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTLEDYESVISACPYDVPRKVAESNQM----AKCDMC-ACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKL..... 189
19 -16.500d1ti6b2 d.58.1.5 (B:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}  ali model 3D-neighbors follow..  10  1....................................................................................................................................................................MEQYYMVIDVAKCQDCNNCGCM-----------------------DEHELNEWPGYTASMQRGHRWMNERRERGTYPRNDINYRPTPCMHCENAPCVAK------GNGAVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVA----QKCTMC-RCAHNCGSFVYEFLKTTPEAMAKKVEEEGLEVIKPELGTKPRVY 187
20 -14.400d2bs2b1 a.1.2.1 (B:107-240) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  18  31..................................................................................................................................................................................................................................................................................IEPEVAQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRCMTLLACHDVCPKN----------LPLQSKIAYLRRKMVSVN....... 133
21 -14.300d2h88b2 a.1.2.1 (B:115-246) Succinate dehydogenase {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  21  30..................................................................................................................................................................................................................................................................................QSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQARCHTIMNCTRTCPKGL.................................. 115
22 -14.100d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  29..................................................................................................................................................................................................................................................................................QTPAQMAKYHQFSGCINCGLCYAACPEDSRDHGKKERMAQLNSQSCTFVGYCSEVCPKH----------VDPAAAIQQGKVESSKDF....... 130
23 -12.400d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}  ali model 3D-neighbors follow..  20  3........................................................................................................................................................................................................................................................................................YTIVDKETCIACGACGAAAPIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEPFDGDPNKF................... 80
24 -11.900d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  22  1.........................................................................................................................................................................................................................................................................................PIEVNDDCMACEACVEICP-DVFEMNEEGDKAVVINPD--CVEEAIDSCPAEAIVRS.............................. 58
25 -11.200d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  21  1......................................................................................................................................................................................................................................................................................AWKVSVDQDTCIGDAICASLCP-DVFEMNDEGKAQPKVEVI---AKEAMEACPVSAITIEE............................. 65
26 -10.100d4id8a_ d.58.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  16  2........................................................................................................................................................................................................................................................................................TIHVDQDKCQGHARCKALAP-ELFDLDDYGNAHEKGDGV--KAWLAKSNCPENAIDITED............................ 65
27 -9.950d3iam32 d.58.1.0 (3:96-246) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  17  78........................................................................................................................................................................................................................................................................................FVILDRERCIHCKRCVRYFEDEVLDFIERGVHTFIFGLPSGFSGNITDICPVGALL................................ 141
28 -9.880d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  20  11.................................EVIKVMLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMEKYYGRTA............................................................................................................................................................................................................................................................................ 82
29 -9.450d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  21  15............................................................................................................................................................................................................................................................................................GPTQCVNCQECVEECRVWKGLPREYV-----SDKRCLPCSSCVARCPSGVKP................................ 97
30 -9.340d2hr7a2 g.3.9.0 (A:157-311) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  65............................................................................................................................................................................................................................................................................................DPTKCVACGRCVETCPPPYYH---FQDWRCVNFSFCQDLNKCIPECPSGYTMNSSNLL.......................... 144
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.