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Query: [E] COG1280 Putative threonine efflux protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTALLGLFIPTFFFVSITPGMNMTLALTLGMSVGYRRTLWMMVGELLGVALVAVSAVVGIAAVMLRYPDIFTLFKIVGASYLVYLGVQMWRSRGKLAINIEQENTYQGSDWGLLVQGFVTAIANPKGWAFMVSLLPPFIDQSLSLAPQLTVLVAIILLSEFISMSLYATGGKGLKRLLSQAHHVRLLNRIAGSLMAGVGIWLYFSLast
1 -6.280d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  11  92LLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAG---------------GAAINRAHDFCTAYPEANALIVACEFC----SLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGR............................................................................... 199
2 -6.170d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  1MNRGALIKLVESRYVRTDLP-PGDTVRVSYKVKEGNRTRIQDFEGIVIRFTVRKVSYGVGVERIFPLHSPLIQKIDIV--AKLYFI........................................................................................................................ 102
3 -6.060d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  3..........LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVK------YSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELS 194
4 -6.040d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  14  5..............LLFVHAHPD---TIAHYTSRGAQVHVVTCTGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIIRPHVVVTY.......................................................................... 134
5 -5.860d4jaqa1 c.95.1.0 (A:2-211) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  92LRPSDIDMIATATVTGVAVPSLDARIAGRLGLRPDVRRMPLFGLGCVAG---------------AAGVARLRDYLRGAPDDVAVLVSVELC----SLTYPAVKPTVSSLVGTALFGDGAAAVVAVGD............................................................................... 199
6 -5.630d5cyfa_ c.56.2.0 (A:) automated matches {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}  ali model 3D-neighbors follow..  36................VCVCGSGRIHNFAISMAKENIAGSHARFVLYKVDHILFADHGIGIPSTLILMHEVTKLLYYAGCKDVLFIRL...................................................................................................................... 116
7 -5.620d3hola3 b.181.1.1 (A:24-130) Handle domain of Transferrin binding protein TbpB {Actinobacillus pleuropneumoniae [TaxId: 715]}  ali model 3D-neighbors follow..  10  19.....................................................LMEPALGYVVKVPVSSFENKKVDISDIEVITNGNLDDVPYKANSSKYNYPDIKTKDSSLQYVRSGYVID-SNEKGYVYYKGNSPA.................................................................... 107
8 -5.590d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}  ali model 3D-neighbors follow..  13  1...................PKVPPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVGCGNTPIFKSGRGCGSCFEI.......................................................................................................................... 74
9 -5.430d4b0na1 c.95.1.0 (A:36-265) automated matches {Ectocarpus siliculosus [TaxId: 2880]}  ali model 3D-neighbors follow..  14  114LNVEDISKLVVVSSTGFLGPGLDCELIKNLGLTRSVDRTLIGFMGCAAA---------------MNGFRNANDYVTANPGKYALMICVELS-----SVHTTFDDNINDAILHAIFADGCAAAVLKGA............................................................................... 220
10 -5.390d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}  ali model 3D-neighbors follow..  11  119QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAG---------------GTVLRLAKDLAENNKGARVLVVCSEVT---AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSD............................................................................... 227

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.