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Query: [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance), from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSENLKEIRGGIGETLTVGLGLIPLGLAFGLLMVQTGFAWWWTPIFSFVIYAGSMEFLAIGMVTAGIGPFSAAVAGFMVNFRHIFYGLTFPRHRIKSGAGRAYSTYALTDESYAIVSARPPGDISGTRVLTVQILCQALWVIPGIIGALVGQVLPDDLKGMDFALTALFVVLAWEAFKNNKDYSLPLFAVVLALVSGFVAPEQMLVIALTTYFLILLLRVRFPNLDKKLEIRTSHELast
1 -7.260d1pp9g_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  1..........................GRQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK........................................................................................................................................... 72
2 -6.320d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1...................................................YGNMTEDHVMHLLQNADPLKVYLKGSFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRHSLEQKPTDAPPK................................................................................................................. 75
3 -6.090d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  11  54.........................TDCIRGKVGLTKGLHIWEIYWPT----RQRGTHAVVGVCTADAPLHSVGYQSLV----------------------------GSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGG.................................. 199
4 -4.950d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  14ISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVVNGVDFSNLDHKEAVNVLKSSRSLTISIVA................................................................................................................................................................. 90
5 -4.910d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  27VKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQKL............................................................................................................................................................................. 90
6 -4.810d1uf1a1 b.36.1.1 (A:7-122) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  20LVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILVNGRSFLNILHDEAVRLLKSSRHLILTV................................................................................................................................................................... 94
7 -4.790d1evya1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}  ali model 3D-neighbors follow..  17  7.......EVASAVKNVLAIGSGVA--GLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLG----DLQLTCSSELSRNFTVGKKLGK................................................................................................................................................ 87
8 -4.750d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15  136.............TNGLPILIWIYGGGFMTG---------------------SATLDIYNADIMAAVGNVIVAS-----FQYRVGAFGLHLAPEMPSEFAEEAPGNVGLWDQALAIR-----------------------WLKDN-AHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMNA........................................... 267
9 -4.720d1z82a2 a.100.1.0 (A:167-313) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  17  7.......EIAGALKNVIAIAAGIL--GFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIG----DLMVTCNSRYSRNRRFGELIAR................................................................................................................................................ 87
10 -4.710d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-Barr virus [TaxId: 10376]}  ali model 3D-neighbors follow..  16VSLPKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVKPCRWRRGGVDVSLTNFLNKYRRFCQLVYL................................................................................................................................................................. 97

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.