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Query: [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQKGWVKLast
1 -108.000d4wepa_ c.94.1.0 (A:) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  90  1.......................ASPVKVGSKIDTEGALLGNIILQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLREYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQKGWT. 281
2 -101.000d3mama_ c.94.1.1 (A:) Osmoprotection protein ProX {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  28  1........................ERVVIGSKPFNEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDAALAVRADWAEENGVEKISDLAEFADQ---LVFGSDPEFASRPDGLPQIKKVYGFEFKEVK-------QMEPTLMYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKD-EKLISVLKLLEDRIDTDTMRALNYQYDVEKKDAREIAMSFLKEQGLVK 270
3 -99.200d4z7ea_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  27  1.........................EITIAGKLGAEPEILINMYKLVIEDEDLKVNVKPNMGKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKT-HDPEEVYTQARDGLAKDFDMTYLKPMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQ---VKAGFTLEFKDRSDGYKGIQDKYGLTFSNLK-------TMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKDQGIIK 270
4 -91.700d3r6ua_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 535025]}  ali model 3D-neighbors follow..  22  1........................QTIKIGAQSMSESEIIASMLGQLIEHHTLKTTTIKNLGSNAVQQQALMNGEIDIAARYTGDALTGTLRMEPE--KDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHLETVSDVKKWAPQL--KLGVDNYWMKLKGNGYQDFTKTYGMTFGGTY-------PMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDTATMQELNYEVDGNLKEPSVVAKEYLEKHRYFE 272
5 -29.300d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1.................ADLPGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSE-VDYNVGYTSLASGDATFTAVN-------------------TPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLFDTNGDGKADLTGCNPGWGCEGAINHQLAA---YELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIM--QLPVADINAQNAIMKASEGDIQGHVDGWIKAH.... 293
6 -9.650d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  3......................ETANIKLGYIPIVEAALIIAQEKGFFAKYGMTGVEVSKQANWASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITNGNKVPMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAAD---YIKGFNKT-----NGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDT----DIDLLAVPPAETVQGMRNGTMDTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKG-----MEAQQWIDDPKNRPEVVQIVSGRNYFN...... 267
7 -8.980d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  1....................SLNREYILIGTGSYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIV------------------VKKSSNISVIDDIK-------GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMA----ELKSSEQAQALCDNKIDVNASIQEASATCDIKFIPLDDRL----PYYQKDIISGGLYNDSPDIQTVSLVTTTELSNDLAYKIVKSIATHLRELRSIAERYYKEIGAIK 300
8 -8.240d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  11  8....................SHVDINNVVCAMPLPYTRLYEGLASGLKQFDGIPFYYAHMRGADIRV-ECLLNGVYDMAVVSRLAAESYLSQNNLCI--------------------ALELGPHTYVGEHQLICRKG-----------------ESGNVKRVGLDSRSADQKIMTDVFFGDSDVER-----------DLSYHESLQRIVKGDVDAVIWNVNELTMLGLEATPLTDDPRFLQATEAVVLTRVD-----YPMQQLLRAV---VDKHALLAHQQRVVSGEQEPS.............. 227
9 -7.650d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  12  1......................AQEFITIGSGSFPVATGIAKLVNDANVGIRANARST---GGSVANINAINAGEFEMALAQNDIAYYAYQGCCI-------------AFEGKPVKTIRALAAL-YPEVVHVVARKDA----GIRTVADLK-------GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIR----VSASQGIQLMQDKRADALLALTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYKGVDVTTPTVMLIASERLSEETVYKFMKAVFGNLEAFKKIAERFYKEAGVLK 298
10 -7.170d3up9a_ c.94.1.0 (A:) automated matches {Actinomyces odontolyticus [TaxId: 411466]}  ali model 3D-neighbors follow..  10  1......................DVVTLTVGATPSPHAKILTYINDNLAADAGIKLDIV-EYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIHLEPLGVFSNK----------------------------HKSLDELPD------GGTIGIISDTANQSRALELLATQGLVSIPETKLKNFDFREVEGPQLVRSLDDFDYAVINGFAQEGGKTISGDALVVESPV--NPAVNVLVWKGDSKKV-----DAIAKLEKLLHSDEVKQY.......................... 227

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.