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Query: [S] COG1814 Uncharacterized membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst METTSNSKLVEVARKAALDEYKEYVTYSVLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWRFRLYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPDREALRRIIKDEEEHERALIAQLDEAIVKYMGALVLGLADAIIEITGAHAGTLGTTNNTVAAGVIGLIVGVGAAISMASASYLQTKHEVGKSPSVAALVTGVGYIAAVALMSLPYFLIHDVYLAFAASIAVGVMLTFLLTFQSAVYADRDFKFEFLQTVGLLLGTAFLTYLLGEWLGSLFGIRNILLast
1 -25.800d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  18  4IEKMADFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVV--QPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEKRLMRYLADMERGHYYTLRAEYEL................................................................................................................................................................. 151
2 -23.000d1vjxa1 a.25.1.1 (A:1-145) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  2.......KVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSQKTVKKIIDQEKEHLRKLLEMKRE................................................................................................................................................................. 143
3 -22.200d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}  ali model 3D-neighbors follow..  13  2.......TLAEFLAHAIALETEAAERYVELADMMEALDTATVFRDMARFSTLHGDEIKQRSRALELPKLMS-EVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPKRLGADFAAEEAEHVVALDKWIEK................................................................................................................................................................. 145
4 -22.000d1zpya_ a.25.1.5 (A:) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  18  9.ELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELK.................................................................................................................................................................................................................................. 80
5 -19.200d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  11  3....AVGSTLENLKAAIAGETGAHAKYTAFAKAAREEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKP--------------DLNLISGANGEIYETSDMYPAFIRKAQEEVHVFTRAKLAESVHAERY....................................................................................................................................................................... 134
6 -19.000d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  13  5.....GSRTEKNILTAFAGESQARNRYNYFGGQAKKVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHA------LIASAAGEHHEYTEMYPSFARIAREEARVFASIAVAEEFHEKRFLDFARNIKEGRV........................................................................................................................................................... 146
7 -18.000d3pwfa1 a.25.1.1 (A:2-134) automated matches {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  8  1..VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPEN------------------LQMGIEGETFEVEEMYPVYNKAAEFQVRTTHYALEAEKIHAELYRKAKEK................................................................................................................................................................. 126
8 -16.700d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  10  4.....GTKTAENLKQGFIGESMANRRYLYFAKRADEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPAT--------------EQMIESAIAGETYEWTQMYPGFAKVAREEAEWFETLARAEKSHAEKFQNVLKQLKGG............................................................................................................................................................. 141
9 -13.900d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  19  139......YTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADL........................................................................................................................................................................................................................ 215
10 -13.100d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  14  2.REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDGELAANMKLIAIDEMRHAENFAERIKE-------EPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIFERIIEEEQAHLTYYENIGSH................................................................................................................................................................. 142
11 -12.500d3b3hb_ a.25.1.0 (B:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  14  1..MQGDPDVLKLLNEQLTSELTAINQYFLHSKMQDNTELAEHTRAESFEEMRHAETITDRILL-------LPNYQRLFSLRVGQTLREQFEADLAIEYEVLERLKPGIVLCREKQDALEQILADEETHIDYLETQLQLMDK-------LGDALYAAQCVSRPPGSA..................................................................................................................................... 161
12 -12.200d4kvsa_ a.25.1.6 (A:) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}  ali model 3D-neighbors follow..  14  6TSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLL--PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNF-PTCLLIQALLIEAFAISFYHTYIPVSDPFRKITEGVVKDEYTHLNYGEAWLKANLES--REELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTE-IGFNTREITRMAAAAL........................................................................................ 221
13 -11.700d4cvra_ a.25.1.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  1..MKGDTKVINYLNKLLGNELVAINQFFLHARMFKNKRLNDVEYRESIDEMKHADRYIERILF-------LPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVRDYMIEILRDEEGHIDWLETELDLIQK-------MGLQNYLQAQIR........................................................................................................................................... 155
14 -11.400d1o9ia_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}  ali model 3D-neighbors follow..  22  131..VTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEE............................................................................................................................................................................................................................................ 191
15 -9.960d2v8ta_ a.25.1.3 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  11  138..VFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALES............................................................................................................................................................................................................................................ 198
16 -9.730d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  1...SEGSADNAALCDALAVEHATIYGYGIVSALS-PPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQLP--MQVSSAADAARLAVRMENDGATAWRAVVEHAETARVFASTALTESAVMA.......................................................................................................................................................................... 125
17 -9.540d2uw1a_ a.25.1.2 (A:) automated matches {Hedera helix [TaxId: 4052]}  ali model 3D-neighbors follow..  10  141MDIKSENSPYLGFIYTSFQERATFISHAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKL................................................................................................................... 327
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.