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Query: [S] COG2311 Predicted membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSRLast
1 -6.210d4bpvk_ d.3.1.1 (K:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  3......................................................................................................................................................................................................................................................................................................DALKEAVATKGPVSVG---IDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGT--KDYWLVKNSWGL----FGDQGYIRMARNNKNH.. 86
2 -4.650d3dplr_ g.44.1.1 (R:) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1.......................................................................................................................................................................................................................................................................................................KKRFEVKKWNAVALWAWDIVVDNCAIC--QANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLEWEFQKYGH............ 90
3 -4.620d4faka1 c.116.1.3 (A:1-159) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  12  63...............................................................................................................................................................................................................................................................................................ILAKIKPQSTVITLEIQGKMLSSEGLAQELFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVL-------IEQVYRAFKIMRGEAYHK.... 159
4 -4.360d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  1...................................................................MRIKGVVLSYRRSKENQHNNVMIIKPLDVIGRLVLWKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV........................................................................................................................................................................................................................................................ 87
5 -4.190d2ljha_ d.50.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  10  19.............................................................................................................................................................................................................................................................................................VAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATAL........................................... 75
6 -4.120d3p0ya1 c.10.2.5 (A:310-480) EGF receptor extracellular domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  17SINATNIKHFKNCTSIGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVITSLGLRSLKEISDGDVIISG.................................................................................................................................................................................................................................................................................. 132
7 -4.110d1hlva2 a.4.1.7 (A:67-129) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  14...................................................................................................................................................................................................................................................................................................................LLIAWFQQI-------AGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFR......................... 61
8 -4.070d4rku3_ f.43.1.0 (3:) automated matches {Pea (Pisum sativum) [TaxId: 3888]}  ali model 3D-neighbors follow..  12  14PRWLAYGEVINGLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGF--EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLL................................................................................................................................................................................................................................................................................. 176
9 -4.060d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1......IQLLNAKQILGQLD-SVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSM-EQGPAAAIGLSLVIGIVMAEVLVKWPNDLYLQ-KLAGILVELTGKTGDAAQIVIGAGI......................................................................................................................................................................................................................................................... 144
10 -4.050d1n8yc2 c.10.2.5 (C:323-488) Protooncoprotein Her2 extracellular domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  12AITSDNVQEFDGCKKIGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRDLSVFQNLRIIRGRILHDGAYSLTLIHSLGLRSLRELGSGLALIHR.................................................................................................................................................................................................................................................................................. 127
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.