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Query: [S] COG2510 Predicted membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMMASWQFWALMSAVFAALTAIFAKVGIQGINSDFATLVRTFVIIGALCLFLTVTGQWQKPGEISARSWLFLVLSGLATGASWLAYFRALQIGDASRVAPIDKLSVVLVALFGAAFLGERMSTINWIGILLIGCGVVLVALRVLast
1 -5.030d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1....................................................................WQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVGMAGMGLFVLFPLVCT 77
2 -4.980d2xg5a2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  6.......................................................................................DQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSAN 61
3 -4.840d1yiba1 a.245.1.1 (A:190-250) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  27....................................................................................FYFGKLRNIELICQENEGENDPVLQRIVDILYATD........................ 61
4 -4.610d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  14  100..................................QKEYSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIDSEDT-WSFACACAAF-----------VLLFLGGISLLLF.. 202
5 -4.450d4djma2 b.7.2.0 (A:153-213) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  10........................................................................................KVEWQRAGNRLKGVNPTPFYINLSTLTVGGKEVKEREYIA............... 49
6 -4.370d2x9aa_ b.37.1.0 (A:) automated matches {Enterobacteria phage [TaxId: 10868]}  ali model 3D-neighbors follow..  5  8.......................................................................................................SKPAFDGTLSNVWKEGDSRYANFENCIYELSGIGI..... 42
7 -4.360d3t6el_ f.26.1.1 (L:) automated matches {Blastochloris viridis [TaxId: 1079]}  ali model 3D-neighbors follow..  12  62..............FAISINPPDLKYGLGAAPLLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLH. 190
8 -4.340d2jo1a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  22.............................................................................................................................VIAGILFILGILIVLSR. 38
9 -4.250d2jp3a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD4 (CHIF) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  33  23.............................................................................................................................IFGGLLCIAGIALAL... 37
10 -4.040d4mf5a2 a.45.1.0 (A:104-234) automated matches {Burkholderia graminis [TaxId: 396598]}  ali model 3D-neighbors follow..  18  14...................................................................QWVMFQMGGIGPMFGQLGFFHKFAGKEYEDKRPRDRYVAESKRLLG--VLEQRLEGREWIGDQYSIADIATF.... 84
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;