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Query: [P] COG3067 Na+/H+ antiporter, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFIAGWLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKVRDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATALTGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAGWLATLSLast
1 -8.150d3cx5c1 f.32.1.0 (C:262-385) automated matches {Saccharomyces cerevisiae [TaxId: 764097]}  ali model 3D-neighbors follow..  11  9................VPEWY------LLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLII.......................................................................................................................................................................................................................................................................................................................................................................................................................... 105
2 -5.270d4ogqb_ f.32.1.1 (B:) automated matches {Nostoc sp. [TaxId: 103690]}  ali model 3D-neighbors follow..  19  75................LPEWY------LYPVFQILRSLPNKLLGVLAMASVPLGLILVPFIENV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 116
3 -4.790d2l93a1 a.155.1.1 (A:91-137) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  38  23..............GRTPAVIKKAMEEFLIKE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 47
4 -4.790d3jbra4 f.14.1.2 (A:798-1076) L-type calcium channel Alpha-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  10  3...................WFTNFILLFILLSSAALAANQILGYFDIAFTSVFTVEIVLKM-------------TTYGAFLHKGSFCRNYFNILDLLVVAVSLISMGLESSTISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVLVTTLLQFMFACIGV........................................................................................................................................................................................................................................................................................................................................................ 150
5 -4.740d1whxa1 d.58.7.1 (A:219-316) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  5  11..........................................................................................................................................................................................................LPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAE................................................................................................................................................................................................................................ 98
6 -4.580d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}  ali model 3D-neighbors follow..  16  18............LRGTCPGGYGYTSNCYKWPNICCY.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 41
7 -4.190d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  4...........RYLADAPQ--NKTMVRFSRKTKQQYVSSEKATGWSAFYV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 48
8 -3.820d4e6sa_ a.28.3.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  26.SLGRLRELCNHWL--RPALHKKQILELLVLEQFLSVLPPHVLSRL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 69
9 -3.730d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  27  29.QQTFTRAFKKQF-AQTPALYRRS.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 50
10 -3.710d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  29.QQTLTRTFKNYF-DVPPHKYRMT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 50
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.