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Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGTLast
1 -71.200d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  34  1.................................................................VEQASDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPIKTLTLSYTFYPREPSK........... 131
2 -9.830d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}  ali model 3D-neighbors follow..  12  7................................................................................................TIPDVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASP-------------GSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAGNASTTFTVTVG.... 100
3 -8.070d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}  ali model 3D-neighbors follow..  13  4.........................................................................................VPGEYRVAEGEIEINAGRE-KTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRTAARFEPGEEMEVELTELGGNREVFGISDLT....................... 99
4 -8.000d1tgja_ g.17.1.2 (A:) TGF-beta3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1............................................................ALDTNYCFRNLEENCCVRPLYIDFRQDLGWKWVHEPKGYYANFCSGP---CPYLRSADTTHSTVLGLYNTLNPEASAS--------CCVPQDLEP-----LTILYYVGRTKVEQLSNMVVK..................... 107
5 -7.710d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}  ali model 3D-neighbors follow..  10  1..................................................CRISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANPNPEGRLEFLIRVLPEGRFSDYLR---------NDARVGQVLSV......................................... 103
6 -7.660d1cx1a1 b.18.1.14 (A:3-153) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}  ali model 3D-neighbors follow..  12  25.....................................................................TSEPVFADGRMCVDLPGGQGNPWDAGLVYNGVPVGEGESYVLSFTASATPDMPVRVLVGEGGGAYRTAFEQGSAPLYAFTNLTFPPDGDAPGQVAFHLGKAGAYEISQVSLT..................... 147
7 -7.650d4bj0a1 b.18.1.14 (A:2-166) automated matches {Rhodothermus marinus [TaxId: 29549]}  ali model 3D-neighbors follow..  33........................................................SSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGNNPFNIQATALPVNVRPGVTYTYTIRARAEQDGAVVSFTVGNQSFDEYGRLHH------FTFEFTVSDQETVIRAPIHFGYAANVGIDGLAIV..................... 164
8 -7.600d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human cytomegalovirus [TaxId: 10359]}  ali model 3D-neighbors follow..  17  1..........................................................................................PW-FQIEDNRCYIDNGKLFARGSIVGNMSRFVFDPKADYGGVGENLYVHADDVE--------FVPGESLKWNVRNL---DVMPIFETLALRLVL.................. 82
9 -6.960d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}  ali model 3D-neighbors follow..  13  17...............................................KMSCEVKSISKLTSIYWLRERQDP--------------KDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYF----CATVGSPKMVFGTGTKLTVV...................................... 115
10 -6.580d2bh1a2 c.55.1.11 (A:2-145) automated matches {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  1..........................................................................SEFLTVRLSSQKEADIPWLVWSAEQQEVIASGQVAGW--EALHEIESYADQRSVVVLLAASDLILTS--------EIPPGASRQLENMLPYLLEDEIAQDVEDVHFCV.................... 99

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.