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Query: [S] COG3859 Predicted membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVKKFPKLFIYSNYLast
1 -4.910d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  9AARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKEGLN................................................................................................................... 84
2 -4.870d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  16MMKKNHEMLEGNERYEVDLAAEIAKHCGFKYKLTIVGDGKYGARDAD------------TKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSK...................................................................... 127
3 -4.540d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}  ali model 3D-neighbors follow..  8  3FDQVGGAFGWKPHKLDPKECAQVAY-CGFGAFYSIVGLMGEKYGAPYNQFPFAMLEANKGGIDWGTICGALYGTFSLFWGRKEVHPMVNELFRWYEVTK-------LPIFNPGDAAQGVKGDLPMSASDSVLCHISVSKWC-IEATSKQRSERCGRLTADAAFKAAEII...................... 179
4 -4.360d2jo1a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  3.PKEHDPFTYDYQSLQIGGLVIAGILFILGILI.............................................................................................................................................................. 34
5 -4.340d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  9  39.....................VLDLIEYLRDKMGFVADVQLAPPNTSYT---------------GLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYPLKSRQEMYDSLLAGIIDVSFM................ 177
6 -4.290d2g87a_ f.13.1.2 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  10  47................LIMLGFPINFLTLYVTVQILLNLAVADLFMVFGGFTTTLYTSLHGFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC------MSNFRFGENHAIMGVAFTWVMALA------APPLVGWSRYIPEGMQC-TNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAA. 234
7 -3.850d4enea_ f.20.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  14  309...........AGNFSMGMLVFIFVARVITTLLCFSSGAPGG-------FAPMLALGTVLGTAFGMVAVELFPQYHLEAG----------------TFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG................................................... 415
8 -3.770d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  2VQQNKPTRSKRGMRRSHDALTAVTSLSV................................................................................................................................................................... 29
9 -3.690d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  56..............FCIDILKKLSRTVKFTYDLYLVTNGKHG--------------KKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPN..................................................... 165
10 -3.690d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309 {Caulobacter crescentus [TaxId: 155892]}  ali model 3D-neighbors follow..  11  30.GQARLAFRVEEHHTNGLGNCHGGMLMSFAMAWGRIISLQKSYSWVTVRLMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGVFKALS......................................................................................... 131
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.