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Query: [R] COG3907 PAP2 (acid phosphatase) superfamily protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MITVPLFATSASGHTVKISKTTRQASTGPSTLNNRSTVPTIKTISLYSLPLSFYFWQVFGLLLVGLLFLALSRSEQLDWLISNYWFDPVGQNFPWEHNKWLDLLNHRLLKMALIATAIAALLWGIYRRNGRLVTTALLFGLGPLVIGILKATSAHSCPWDLVEYGGKALNYVLMDTAPPGAGPGHCFPGGHASSGFAVMALFFLFYPERPRLAMLCWFAGIGLGMLMGFGQIMRGAHFLTHNLWAGWWVWLSQLAAFWIISGYYQRIKGTELast
1 -30.900d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}  ali model 3D-neighbors follow..  15  73.................................................................................................................FSGAFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYG-------STCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQRQN-------EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAKA 217
2 -16.900d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis [TaxId: 38902]}  ali model 3D-neighbors follow..  10  225..KTTKRFATQSEHFLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRS-----------------------WQTAQGLYWAYDGSNLIGTPPRFYNQIVRRIAVTYKKEEDLANSEVNNADFARLFALVDVACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATN-AYPSGHATFGGAVFQMVRRYYNGRVGTWKDDEPDNIAIDMMIAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVDN......... 518
3 -15.400d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Ascophyllum nodosum [TaxId: 52969]}  ali model 3D-neighbors follow..  15  412.........................................................................................................................................................................................SYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVY--LAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLH............. 506
4 -14.300d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae (Corallina officinalis) [TaxId: 35170]}  ali model 3D-neighbors follow..  13  479.........................................................................................................................................................................................SYGSGHAVVAGACVTILKAFFDANFQIDQVFEVDT--LADNVAIGRNMAGVHYFSDQFESLLLGEQIAIGILE............. 571
5 -8.200d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  13  8.........................................................ITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSE-RYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGP--------------------------------FGLSGVVYAVLGYVFIRDKLNHHLFFTMLLVGIALGFISPLFEMGNAAH-ISGLIVGLIWGFIDS.................. 181
6 -7.850d2xova_ f.51.1.1 (A:) GlpG {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2.................................................RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEF----RYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--------------------------------GGLSGVVYALMGYVWLRGERDPQSGLIIFALIWIVAGWFDLFSMANGAH-IAGLAVGLAMAFVDSL................. 180
7 -6.470d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]}  ali model 3D-neighbors follow..  10  1............................................................................................................................................................................................SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYG---SLALTGKG-HGTDKAILNGLENK..................... 58
8 -6.290d4ogqa_ f.21.1.2 (A:) automated matches {Nostoc sp. [TaxId: 103690]}  ali model 3D-neighbors follow..  10  38.........................................................ITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVSGVILAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPEAIPVVGVLISDLLRGGSSVGQATLTRYYSA----------TFVLPWLIAVFMLFHFLMIRKQGISGPL............................ 214
9 -6.120d3cx5c2 f.21.1.2 (C:1-261) automated matches {Saccharomyces cerevisiae [TaxId: 764097]}  ali model 3D-neighbors follow..  11  35.....................................................LLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHN----GYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFAL--------HYLVPFIIAAMVIMHLMALHIHGFIFKDLVTVFLFMLILALFVF.............. 245
10 -5.720d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  12  36......................................................................................................................................LSVYITDDQEIRELNKTYRKKDKPTDVL-----------------------SFPMGEEFGGYKILGDVVISQDTAERQARHSLEEEVKRLIVHGIVHLLGYDHEKGG.............................. 122
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.