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Query: [S] COG4241 Predicted membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGKLast
1 -4.950d1vzma_ g.32.1.0 (A:) automated matches {Argyrosomus regius [TaxId: 172269]}  ali model 3D-neighbors follow..  19  8TESLREVCETNMACD------EMADAQGIVAAYQAFYGPIPF.............................................................................................................................................................................................................................................................................. 43
2 -3.450d5an1a2 a.45.1.0 (A:86-219) automated matches {Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]}  ali model 3D-neighbors follow..  7  12...............................................................................................................................TDMIECQLTDMHEAFFTVTYEHYEQKDAYTASLPAKLRQYSDFLGSRPWFAGDKLTYIDFLAYEIFLQAFQKRFEDLEAIKKY...................................................................................................... 110
3 -3.220d2q4pa_ a.204.1.2 (A:) XTP3-transactivated gene A protein homolog RS21-C6 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  7  9........................................................................................................TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQAVISKMDTNRQRYP........................................................................................................... 109
4 -3.190d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1.........AWLLMAFTALALEL---TALWFQHVMLLKPCVLCIYE-----RVALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQL............................................................................................................................................................................................................................. 74
5 -3.170d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  4.......................................................................................................................EFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEI-------VLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVAL-----EQAVEAVLAKAKVTEKETTFNELMNQQA. 185
6 -3.030d1ay2a_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  14  2.....TLIELMIVIAIVGILAAVA---------------LPAYQDYTARAQVSEAILLAEGQ.......................................................................................................................................................................................................................................................... 43
7 -3.000d1wvka1 g.82.1.1 (A:10-86) Expressed protein At2g23090/F21P24.15 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  8  7.......................................................................................................................................KSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVVACFPHLKK.......................................................................................................... 77
8 -2.790d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]}  ali model 3D-neighbors follow..  14  8.RGSKCLGENKQCCKGTTCMFYANRCVGV........................................................................................................................................................................................................................................................................................... 35
9 -2.790d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  12.....................................................GLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLD........................................................................................................................................................................ 102
10 -2.730d2ayta1 c.47.1.0 (A:1-121) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  7  1........................................................................................................................MLLNLDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVD................................................................................................................ 80
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.