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Query: [S] COG4984 Predicted membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQNTTLFHLSWRKYLTLLFLLLGTGFFASGVITWIAANWDYFSRFEKLYGVQSLFGVSILLSVFFYYYEAKKKQVTSVLPLVFAFLAAVLLGAIFALIGQTYQTGADPWELFAIWSICQIPFLLLFPNVASALLLLVTANVALSLAISLLGDIVHMTIFLNMLFLVCYEYFGERLRDQNWRILPKIALFILVFAFGWALIVNNSVLLSWLLSAGLVYYYKERRFDFLNLIVLFFYLVVSICTKVLLSSGEDFLSDIFLVTILAFGGTIGAIITLIKWFKWHNPTASRVTWHIYPLFILLIIFCTGLLLITLFFSFGLEDEQDLIYPSILFLIIALVMHFNQKEKADWFDIAIDMFMATGFILYFIFFLFDGENDLYLALMAILSVFLYQLRSSNWLRFLIASLFIIAFLVYIGFFDLRWYAYYEEHLGQFVLSAQQWIILGGLLLYYFFSLSEERPYTIKLLPIAWAMLLVGLAMNLDIFNRWTFLDTAQQTPEMSDLNDWFHVITGYFFTALTSDTWLIKSLHLLISITPIIFFVLISRRFELTKFLYASVLLTLLALCLGFIAVNETLACISLLLLAYLSVSRVLFALALLGVIMNLSYYYYLLSIPLLHKSFLLMGVGIVLALVTFVLLRYNKAPQATLQAESHNTFQPQLast
1 -5.870d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  20  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLFYVI---------NFITPCVLISFLASLAFYLPAEKMSTAISVLL------AQAVFLLLTSQRLPETA-----LAVPLIYLMFIMSLVTGVIVNCGIVLNHFRTPSTHVLSTRVKQIF... 106
2 -5.790d4bj8a_ b.61.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}  ali model 3D-neighbors follow..  12  5..................................VTGVWNELGSTLRVKAEGSEVRGVYQTAV-HHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRS...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 97
3 -5.130d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  19  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLYFVV---------NVIIPCLLFSFLTGLVFYLPTEKMTLSISVLL------SLTVFLLVIVELIPSTS-----SAVPLIYMLFTMIFVISSIIITVVVINHHRSPSTHTMPQWVRKIF... 106
4 -5.050d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  17  99..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TQKEYSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMYYSWSFACACAAFVLLFLGGIS-LLLFSLPR.................... 206
5 -4.860d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  22  12..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAPILKQSKFKVSGSDKFANVIDFLRRQ---HSDSLFVYVNSAFSPN 56
6 -4.700d2f2ca1 a.74.1.1 (A:8-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}  ali model 3D-neighbors follow..  16  37.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQK-IGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNL 123
7 -4.700d2jp3a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD4 (CHIF) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  10.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FYY--DWESLQLGGLIFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVTP. 58
8 -4.480d2hewf1 b.22.1.1 (F:58-185) Tumor necrosis factor ligand superfamily member 4, OX40L {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  40  37..........................................................................................................................................................................................................................................................................................................VVIKCDGLYIIYLKGSFFQEVKIDLHF........................................................................................................................................................................................................................................................................................................................................ 63
9 -4.430d3d32a2 d.15.1.3 (A:3-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  40..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RIGDLDKKKYLVPSDLTVGQFYFLIRKRHLRAEDALFFFVNNVIPPT 87
10 -4.420d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi`s sarcoma-associated herpesvirus [TaxId: 37296]}  ali model 3D-neighbors follow..  18  28.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQK-TGSACLLVASKLRSLTPISTSSLCYAAADSFSRQ 114
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;