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Query: [S] COG5373 Predicted membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLEAIALLAFVMALAAFLGGRRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGRWPVWVGGLALALGGYFLVQYSIEAGLLSPAVRLTLAAIFGLALGVAGEVIRRRDVPAIADRFRNAMIPGVLTAAGAVTLFGVVYAAYGIYDFIGTGAAFVLLALVSLATVGLSLLHGQALAGLGLLASLLTPLFVSSGEPRPWVLFGFLAVAWLATLAASRLRRWSVVPTLANAGLGLWGLAYVALATPFEAPPVTFALLVMIAGVALIWPGRAERTAEPSGTTQIGAASEPGAWERLFTPPYLAISISAAIVATVLALLFISPAVDAARFPVSDFVVIVVALAAAGSLRPAAIYAALLAAFGAVAGTWSLTALSGVLAYLDPSFAGSPPEIVVPGRTAMLTAMTLSALFILLGGFVLARRPAGDRQFAALWAGIAAVVPNALLAMSFVMTGSFAFDLPHGLAAFAGGIFLLGLVEWLYRRSAGAGDADVDGGLPALGSFGLFVIGLHAWTDGLVTTLAIALLGAGYSFATRLRSWPVLPWVTVAGAVVILARIAWEPTIVGPGNLGTTPVFNALLPGYGIPALLLVASAYLLQAWPDLRVRNLLQALASLFVLLTLAILVRHAMNRGVLDSSVPTLGEQAIYTLLAIGASGIFMTLDGRSPSPVFRYGGMALGVLSMLSVLGAHLVGLNPYFSGELLGSLPFFDLLLIGYLLPAIGYFGLAWYARGRRPLPYVVALAVSGAILAFAWATLSVRRFWQGQNVADWKGFLQGETYTYSVVWLVLGVLLLVAGSRLDAKSIRIASAVLVFVAVLKVFLVDMSNLEGFLRALSFIGLGAVLIGIGRFYQKILSGSAGNAGEGARRALast
1 -11.000d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}  ali model 3D-neighbors follow..  9  5....................SREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDN.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 108
2 -8.050d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  8  43...............HTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYG-----------AHYGVD--YAMPENSPVYSLTDGTVVQAGGNQVTIKEAN-----------------SNNYQWYM------HNNRL--------------TVSAGDKVKAGDQIAYSGSTGNSTAPHV-GIGNQYAVDPTSYL.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 269
3 -7.930d2bw4a1 b.6.1.3 (A:7-166) Nitrite reductase, NIR {Achromobacter cycloclastes [TaxId: 223]}  ali model 3D-neighbors follow..  8  1...................................................................................VDISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEK-------LVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGTTLRFKATKPGVFVYH------------------------APEGMVPWHVTSGMNGAIMVLPRDG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 155
4 -6.550d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  11  4................LADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKANLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTLQNSYYN---KKISKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINF---ALLSVASLNREHNSIEMAKDVKISGSSIG--IYATDTLN...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 274
5 -6.550d3cx5c2 f.21.1.2 (C:1-261) automated matches {Saccharomyces cerevisiae [TaxId: 764097]}  ali model 3D-neighbors follow..  9  27............................................................................................................................NYWWNMGSLLIVTGIFMAMHYSSNELAFSSVEHIMRDVHNGYIL----RYLHANGASFFFMVMFMHMAKGLYYGSGVIIFILTIATAFLGYCCVYGQMSHWGATVIT-----------NLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFALHYLVPFIIA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191
6 -6.370d1wvqa_ d.256.1.0 (A:) automated matches {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  13  14...................................................................................................................................GTNVIIGQAHFIKTVED--LYEALVTSVPGVKFGIAFCASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGH-SPLGVETEKD....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 147
7 -6.250d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1MQHYLHIRPAPSDNLPLVDLIEH-PIFDPKEKDLNETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQLLRQRPSGAMPSEIKGLEFSEGLAQGKKQRLSKKLRRKLQMWLWSQTFCPVLYAWNDLGSRFWPRYSKRSCSVPEGMVCKPSKSVHLTV------LRWRCQRRGGQRCGWIPIQYPIISE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201
8 -6.240d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  4......IRNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGDEYDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKKRRKDHSFLGFEWQKRW--------CALSKTVFYYYGSDKD------------QKGEFAI--GYDVRMNNTLRKDGKKDCC--------------FEICAPDKRIYQFTAASPK---VQQLKFILQDLG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 209
9 -6.110d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}  ali model 3D-neighbors follow..  18  11.................................................................................................................................VGHLSTPISDSGLVKTFIGN--LSPILRLEVGMAHGYFLIGPWVKL------GPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTA--------FVGAMGS---------------AFVAFFLLENFLVV...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 142
10 -6.110d4ogqa_ f.21.1.2 (A:) automated matches {Nostoc sp. [TaxId: 103690]}  ali model 3D-neighbors follow..  13  30............................................................................................................................NIFYCLGGITLVCGFAMTFYYKPTAEAYSSVQYIMNEVNFGWLI----RSIHRWSASMMVLMMILHVFRVYLTGGGVILAVITVSFGVTGYSLPWDQVGYWAVKIVS-----------GVPEAIPVVGVLISDLLRGGSSVGQATLSAHTFVLPWLIAVF.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 197
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.