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Query: [S] COG5650 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDQKLDQQKVDRVSPGDSEPVARDFINAIGGRFGRFAQVGTQRFWTPLRVLITTSLVFLAMGFLTKANCIQGSRGTDGVVSLNWSGSRQYTSACYNDIVPLYGGRGIDAPGFPYAFSWQEGDLTRYMEYPVLGGIFQWICGIITRFLYPVVDVIPFHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNWDTPAIAAVIGAMLAVKRGNPLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIAYPKAWNEFLRLNRERGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSPQYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFIVVMIVGVIRQMLGRRADPVMDAHAGRDLLAGPFGAGERRKALKEVSLast
1 -6.200d2pspa1 g.16.1.1 (A:1-53) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  9  10...........................................................RQDPKNRVNCGFPGITSDQCFTSGFDSQVPGVPWCFKPLPA.................................................................................................................................................................................................................................................................................................................................................................................................. 52
2 -6.020d1rewc_ g.7.1.3 (C:) BMP receptor Ia ectodomain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  41...............................................................TLASGCMKYEGSDFQCKDSPKAQLRRTIECCRTN----LCNQYLQPTLPP..................................................................................................................................................................................................................................................................................................................................................................................... 86
3 -5.940d2g87a_ f.13.1.2 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  9  38...............................................................................................................................................................SMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA--------DLFMVFGTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM------FRFGENHAIMGVAFTWVMALACAAPPLVGEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF---------IIPLIVIFFCYGQLVFTVKEAKAEKEVTRMVIIMVIAFLI----------CWL-PYAGVAF.............................................................................................. 273
4 -5.940d1wvka1 g.82.1.1 (A:10-86) Expressed protein At2g23090/F21P24.15 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  12  1.............................GGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMS---CMQTFICTTSEVKCREHAEAKHPKACFPHLK................................................................................................................................................................................................................................................................................................................................................................................................... 76
5 -5.760d4aeaa_ g.7.1.1 (A:) alpha-Cobratoxin {Monocled cobra (Naja kaouthia) [TaxId: 8649]}  ali model 3D-neighbors follow..  11  1IRCFITPDITSKDCPNGHVCYTKTWCDAFCSIRGKRVDLG----------------------------CAATCPTVK---------TGVDIQCCSTD------------------------------PFPT................................................................................................................................................................................................................................................................................................................................................................... 67
6 -5.590d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  11  1..................DQKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCMDAVHKPHDGNLVCADCHAVHDMNV-----GQKPTCESCHDDGRTSASVLK............................................................................................................................................................................................................................................................................................................................................................................................ 89
7 -5.570d2pspa2 g.16.1.1 (A:54-106) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  15  4.........................................................ECVMQVSARKNCGYPGISPEDCAARNFSDTIPEVPWCF....................................................................................................................................................................................................................................................................................................................................................................................................... 43
8 -5.340d3u1la1 g.66.1.2 (A:3-121) Pre-mRNA splicing factor Cwc2 / Cwf2 / Prp3, zinc finger domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  11  4....DKSAKVQVKESELPSSIPAQTGLTFNIWYNKWSQGFAGNTRFVSPFALQPQL-LFFCLFFAKGMCCLGP-EDIGKLALRTEVLDCFGREKFAD..................................................................................................................................................................................................................................................................................................................................................................................................... 117
9 -5.220d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Nostoc sp. PCC 7120 [TaxId: 103690]}  ali model 3D-neighbors follow..  10  10............................................................................................................................................................................................................................................................................................................................................IYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAIAHYARYIDWMVPLLLLSLIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELAN......................... 163
10 -5.150d6eida_ f.13.1.0 (A:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  10  17......................................................................................................................................................................................................................................................................................................................................QTASNVLQWLAAGFSILLLMFYAYQTWKSTCGWEEIYVCAIEMVKVHRVQWLRYAEWLLPVILIHLSNDYSRRTMGLLVSDIGTIVWGATSAMATGYVKVIFFCLGLCYGANTFFHAAKAYIEGYHTVPKGRCRQV........................ 179
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;