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Query: [S] KOG1008 Uncharacterized conserved protein, contains WD40 repeats, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYLANESRYQYARCVAASYHSDQPIIAVGLADGKVGICNFRDTYDSSWEYTPRQQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGVGESANSICWDRNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSVSPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIAWCPTRTSLLSSLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNCLSWHSRDFERALLLADALNILDFRLPATLHTAHSNRRKLPLLMQRPLYTPASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELDLVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGLKATLGINLGHTSEALMASSRIESQVLQWPEGINNSNKLICYRSEQRDLALQLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADNMRDPSMYRITVIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLTMEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQIQAAIDGGDLNGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYWIASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSNALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLLast
1 -41.000d2yb8b_ b.69.4.1 (B:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  16  29LEWPSLTAQWLP-DVTKQDGKDYSVHRLILGTHTSDEQNHLLVCGKIEIEIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD----DHTICLWDINATPKDAKNIFTGHTAVVEDVAWHLLHESLFGSVADQKLMIWDTRNNNTSTVDAHTAEVNCLSFNPYSEFITGSADKTVALWDLRNLKLKLHSFEHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAED----GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 397
2 -40.500d4pswb_ b.69.4.0 (B:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  14  27LTWPSLTVQWLPTPVQELDGGFIKQELIIGTHTSGEEENYLKPRSNIRITAKYEHEEEITRARYMPQ-DPNIVATINGQGTTFLYSRSEGLQSTLK---FHKDNGYALSFSTLVKGRLLSGSD----DHTVALWEVGSGGDPTRTWNDLHSDIINDNKWHNFNKDLFGTVSDSLLKINDVRANNTTIDTKCPQPFNTLAFSHHSSNLLAAADSYVYLYDLRNMKEPLHHMSHEDAVNNLEFSTHVDGVVVSSGSDNR-LMMWDLKQIGAEQTPDDAED----GVPELIMVHAGHRSSVNDFDLNPQIPWLVASAEEENILQVWKCSHSLPIV..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 383
3 -35.000d4ggca_ b.69.4.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  23....LNLVDWSSGN---VLAVALDNSVYLWSASSGD---------ILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNS---YILSSGS----RSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGTFTQHQGAVKAVAWCPWQSNVLATGDRHIRIWNVCS-GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE------------------LKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 310
4 -33.500d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  11  7.VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNK----------VQVHELKEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSG----SRVISICYFEQENDVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEESSSSCGWVHGVCFSANGSRVAWVSDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG---HDCFPVLFTYDSAAERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKSQFCTTGMDGGMSIWDVRSLESA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 364
5 -33.300d4yvda_ b.69.4.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  15.LGWVRCIAVEPGN-QWFVTGSADRTIKIWDLASGKLKL-----------SLTGHISTVRGVIVST--RSPYLFSCGEDKQVKCWDLEYNK--VIRHYHGHLSAVYGLDLHPTIDVLVTCS-----RDSTARIWDVRTKASVHTLS--GHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGV---LVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSL----------DSESGIFACAFDQ-SESRLLTAEADKTIKVYRED........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 303
6 -33.000d1gxra1 b.69.4.1 (A:443-770) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  42.GEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPGNK------SPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCS----DGNIAVWDLHNQTLVRQFQ--GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMSSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVST--GKDNLLNAWRTPYGASI-------------------FQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 326
7 -32.800d3jb9l_ b.69.4.1 (L:) Pre-mRNA splicing factor Cwf17 {Schizosaccharomyces pombe 972h- [TaxId: 284812]}  ali model 3D-neighbors follow..  15  9.TAEVLVARFDPSG-SYFASGGMDRQILLWNVFGDVKNYG----------VLNGCKGAITDLQWSR--DSRVVYCSSSDTHLMSWDAVSGQ--KIRKHKGHAGVVNALDVLKVGSELLTSVSD----DCTMKVWDSRSK---DCIKTIEEKYPLTAVAIAQQGTQVFIGGIDGAIKIWDLRNNHCSVLKGHKDIITSLAISKDGSSLLSNSDNTVRIFDVKPFASAQRQLGQEHNLLGVAWSRNSRFVGA--GSSDKNVYVWSATG-------------------DLRYVLPGHEGSVNHVDFHP-HQDIILSCSSDRTIFLGELN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 299
8 -32.600d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  14  17.RGTAVVLGNTPAGD--KIQYCNGTSVYTVPVGSLTDTE-----------IYTEHSHQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTSNGNLT--GQARAMNSVDFKPSRPRIISGSDDNTVAIFEGPPFKKSTFGEHTKFVHSVRYNPDGSLFASTGDGTIVLYNGVDGTDSLKNVAHSGSVFGLTWSPDGTKIASA--SADKTIKIWNVATLKVEKTIPVGT---------------RIEDQQLGIIWTK---QALVSISANGFINFVNPE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 311
9 -32.400d3frxa_ b.69.4.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  14.NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------FGVPVRSFKGHSHIVQDCTLTA--DGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK-KASMIISGSR----DKTIKVWTIKGQC---LATLLGHNDWVSQVRVVPNEKTIISAGNDKMVKAWNLNQFQIEDFIGHNSNINTLTASPDGTLIASAGDGEIMLWNLAA-KKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAG----------YSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 314
10 -32.000d5gmkn1 b.69.4.1 (n:151-455) Pre-mRNA splicing factor Prp17, WD40 domain {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}  ali model 3D-neighbors follow..  11  12.PEGTTALKFLPKTGHLILSGGNDHTIKIWDFYHDYECLR----------DFQGHNKPIKALRFTE--DCQSFLSSSFDRSVKIWDTETGK--VKTRLHLNSTPADVESRPTNPHEFIVGL-----SNSKILHYDDRVSENQGLVQTYHHLSSILALKYFPDGSKFISSSEDKTVRIWENQINVKQISDTAQHSMPFLNVHPSQNYFCAQSDNRIYSFSLKHPKKIFKGHSSAGYGISLAFSGDGRYICS--GDSKSRLFTWDWNTSRLLNNIK-----------------IPGNKPITQVDWHPQETSKVICSGAAGKIYVCD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 305
11 -31.900d3v5wb_ b.69.4.1 (B:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  17  54.LAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVH-----------AIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGRVSRELAGHTGYLSCCRFLD-DNQIVTSS-----GDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRTFTGHESDINAICFFPNGNAFATGSDATCRLFDLRADQMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGV------------------LAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 339
12 -31.300d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  17.RSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFER-----------TLKGHTDSVQDISFDH--SGKLLASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSAS-----RDKTIKMWEVQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKELREHRHVVECISWAPESSYLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC--ADDKTLRVWDYKNKRCMKTLN------------------AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 317
13 -31.100d3uvka_ b.69.4.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  15.TKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEK-----------TISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP-QSNLIVSGSF----DESVRIWDVKTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQKTLIDDDNPPVSFVKFSPNGKYILAATDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN-VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ------------------GHTDVVISTACHPTENIIASALENDKTIKLWKSDC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 304
14 -30.900d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  121.DLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVM-----------ILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKTYIGHKDFVLSVATTQNDEYILSGSDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSYNVFATGSGDCKARIWKYKK....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 387
15 -30.700d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  17.RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ--------FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKENVKSEFQVLAGPISDISWDFEGRRLCVVGEGR---DNFGVFISWDSGNSLGEVS--GHSQRINACHLKQSRPMSMTVGDDGSVVFYQGPPFKFSASHKQGSFVRDVEFSPDSGVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQQLG--------------NQQVGVVATG--NGRIISLSLDGTLNFYEL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 325
16 -29.600d2ymua1 b.69.4.0 (A:5-290) automated matches {Nostoc punctiforme [TaxId: 272131]}  ali model 3D-neighbors follow..  17  12.SSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQ------------TLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSP-DGQTIASASD----DKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNRNG-------------------QLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 286
17 -28.900d1s4ux_ b.69.4.1 (X:) Antiviral protein Ski8 (Ski8p) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  14.DADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLSMINNSNSIRSVKFSPQGSLLAIAHDGCITLYETEFGERSLGEFAHSSWVMSLSFNDSGETLCSA--GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSKGWRSGMGAD-LNESLCCVCLDRSIRWFR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 390
18 -27.200d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  12  12.NKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPD----------VHATMITGIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHGGQDSKVHVYKLSGASVSE-VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTFHTAKVACVSWSPDNVRLATGSDNSVIVWNMNKPSDHPIIIHAMSSVNSVIWLN--ETTIVSAGQDSN-IKFWNVP........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 298
19 -27.200d3jb9u3 b.69.4.1 (U:173-488) Pre-mRNA splicing factor Prp19 {Schizosaccharomyces pombe 972h- [TaxId: 284812]}  ali model 3D-neighbors follow..  15  37.TESTTSFFPSPEN-SSFVLCLHKDELLCLDIQSNSTLKIFE--------------GSALACCWLT--SSKIAVATADAISIFEFPVSSSSVGEPTSSIPIDEKVNFLQAHPSGEYLLAASNEK------CYIFSLKSQV-----YNITVAQHITSLAVHPDGNLFVAGLENGELRFFETSSGNELTKGPHSSPVKTLQFGENGYWLVVTTDSDIFIWDLRK-SELVQKIPLQTKVAAVSLDITSQ-LLVSSDGETLYVHIYVKSSKSWRCMSQ------------------THVSSISNLVWLN-ELHQLLFSTSNGAILRL.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 315
20 -27.000d3mksb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  53.DGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTH-----------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPVGVLRGHMASVRTVS----HGNIVVSGSY----DNTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVS--GSENQFNIYNLRSGKLVHA-----------------NILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 353
21 -25.900d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  11RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR-----------ILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGE--MLNTLIHHCEAVLHLRFNN---GMMVTCSK----DRSIAVWDMASPTDITLRRVLGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---------EHSGRVFRLQFDEF---QIVSSSHDDTILIWD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 293
22 -25.400d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  13.NKGITALTVNP-----LISGSYDGRIMEWSSSS----------------MHQDHSNLIVSLDNSK--AQEYSSISW-DDTLKVNGITKHEFGSQDIIKSVRLNSPGSAVSL-SQNYVAVGLEEGN---TIQVFKLSDLEVSFDL-KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSAFRTSKINAISWKPAEKGANESLDTNIFIYSVKRPMKIIKALAHKDGVNNLLWETPST--LVSSGADA-CIKRWNVV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 287
23 -23.700d1yfqa1 b.69.4.2 (A:1-341) Cell cycle arrest protein BUB3 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  11.KDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK--------NVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQA--LTNNEANLGICRICKYGDDKLIAAS-----DGLIEVIDPRNYGDGVIAVKNLNSNNTKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESPVNSIEFSPRHKFLYTAGDGIISCWNLQT-RKKIKNFAKFNEDSVVKIACSDNILCLATSDD--TFKTNAAIDQTIELNASS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 332
24 -23.400d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1.........WRRGCGNRIVSGSDDNTLKVWSAVTGKCLR-----------TLVGHTGGVWSSQMRDNI----IISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHE---KRVVSGSR----DATLRVWDIETGQCLHVLM--GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPN---------------KHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 289
25 -10.700d2hqsa1 b.68.4.1 (A:163-432) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  45..............................................................AWSPDGSK-LAYVTFESGRSALV-IQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN--LYVMDLASGQIRQVTDGRSNN---TEPTWFPDSQNLAFTSGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGVLNLVSTDGRFKARLPATDGQVKFPAWSP................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 267
26 -10.000d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  1....MPNLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRK------------IVSNLGVINNARFFPDGRKIAIRVGSSLNTADLYFYNGENGEIKRITYFSGKSTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT---HILFADGRRVIGRNTFERGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS---IYIFNPDTEKIEK.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 267
27 -9.980d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  10  12IAVEKYSLQGVVDGDKLLVVGFSEGNAYLYDGGETVKLNREPINSVLDPHYGVGR------VILVRDVSK-----GAEQHALFKVNTSRPGEEQR---LEAVKPMRILSGVDTGEAVVFTGATEDRVA----LYALDGGGLRELARLPG-----FGFVSDIRGDLIAFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLREARLVTVDPRDGSVEDLELPSKDAITWLGYLPDGRLAVVARREGRSAVFIDGER........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 269
28 -9.760d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGML---------PFSTDWFMT---WEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSCNCCGGNF-----------THAHQPVGSFACSLC........... 156
29 -9.580d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  14  9..............................................................DFSPLDGDLIAFV--SRGQAFIQDVSGTYVLKVPEPLRIRYV----RRGGDTKVAFIHG---TREGDFLGIYDYRTGKAEKFEENLG---NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKTVIERSREAMITDFTISDNSRFIAGYVMQAIHVYDMEG-RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 202
30 -9.570d1ri6a1 b.69.11.1 (A:4-333) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  34.PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------ALTFAAESALPGSLTHISTDHQGQ--VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP----ALKQDRICLFTVSDDGHLVAQDTTVEGAGPRHMVFHPNEQYACVNELNSSVDVWELKDPHGNIECVQTRWAADIHITPDGRHLYACTASLITVFSVSEDGSVLSKEGFQPT-RGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 307

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.