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Query: [U] KOG1162 Predicted small molecule transporter, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKFSKELEAQLIPEWKEAFVNYCLLKKQIKKIKTSRKPKPASHYPIGHHSDFGRSLFDPVRKLARTFSDKLFSNSEKPEILQVRRRRGSSETGDDVDEIYQTELVQLFSEEDEVKVFFARLDEELNKVNQFHKPKETEFLERGEILKKQLETLAELKQILSDRKKRNLSGSNSHRSFSSSVRNSDFSAGSPGELSEIQSETSRTDEIIEALERNGVSFINSATRSKTKGGKPKMSLRVDIPDAVAGAEGGIARSIATAMSVLWEELVNNPRSDFTNWKNIQSAEKKIRSAFVELYRGLGLLKTYSSLNMIAFTKIMKKFDKVAGQNASSTYLKVVKRSQFISSDKVVRLMDEVESIFTKHFANNDRKKAMKFLKPHQTKDSHMVTFFVGLFTGCFISLFVIYIILAHLSGIFTSSDQVSYLETVYPVFSVFALLSLHMFMYGCNLYMWKNTRINYTFIFEFAPNTALRYRDAFLMGTTFMTSVVAAMVIHLILRASGFSASQVDTIPGILLLIFICVLICPFNTFYRPTRFCFIRILRKIVCSPFYKVLMVDFFMGDQLTSQIPLLRHLETTGCYFLAQSFKTHEYNTCKNGRYYREFAYLISFLPYFWRAMQCVRRWWDESNPDHLINMGKYVSAMVAAGVRITYARENNDLWLTMVLVSSVVATIYQLYWDFVKDWGLLNPKSKNPWLRDNLVLRNKNFYYLSIALNLVLRVAWIETIMRFRVSPVQSHLLDFFLASLEVIRRGHWNFYSGELast
1 -7.120d5jsia_ f.13.1.0 (A:) automated matches {Candidatus actinomarina [TaxId: 1389454]}  ali model 3D-neighbors follow..  10  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EELTYRLFMVATVGMLAGTVFLLASSREVKPEHRRGVYISALVCGIAWYHYQKMGAS---RYVD------------LTVPLMFVEVLAVTRKGAAYNEAVRNWGIAATVMIGA---------GYYGETSAAGSNEYWTGFVIAMATYVWLMRNLLILVGWIIYGYIAPVVGDFDAIREVLYTIADIINKVGLGVLVL. 207
2 -7.030d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}  ali model 3D-neighbors follow..  11  40..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTT-PLLLLDLALLVDADQGTILALVG------ADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYIL-------YVLFFG------FTSKAESMRPEVASTFKVLRNVTVVLWSAYIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILL. 220
3 -6.990d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Nostoc sp. PCC 7120 [TaxId: 103690]}  ali model 3D-neighbors follow..  11  13............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMV------------------------------TTPLLLLSLSWTAMQFIKKDWTLIGFLM--STQIVVITSGLIADLSERDWVRYLWYICGVCAFLIILW------------------LRAKTRTQSSELANLYDKLVTYFTVLWIGYIGPSGFGWINQTIDTFLFCLLPFFSKVGFSFLDL. 218
4 -6.960d4hyja_ f.13.1.0 (A:) automated matches {Exiguobacterium sibiricum [TaxId: 332410]}  ali model 3D-neighbors follow..  8  3.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NLLVLATQYMFWVGFVGMAAGTLYFLVERNSLAPEYRSTATVAALVTFVAAIHYYFMK---LSEIDGFPTEIRYIDWLVTTPLLLVKFPLLLGLKGRLGRPLLTKLVIADVIMIVGGYI---ESSINIAGGFTQLGLWSYLIGCFAWIYIIYLLFILIGWAIYVTLFAPGVEIQLVRELIYNFADLTNKVGFGLI... 229
5 -6.420d6eida_ f.13.1.0 (A:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  11  2..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CYCAGWIESRGTNGAQTASNVLQWLAAGFSILLLMFYAYQTWKS--TCGWEEIYVCAIRYACPVILIHLSNLTGLSNDYSRRTMGLLVSDIGTIVW---------GATSAMATGYV--KVIFFCLGLCYGANTFFHALFFVSWGMFLGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLL... 231
6 -6.360d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  13  3..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KLYNAARFVLLSR-MRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPA-KLLHPMMPFLTSELYQALTGKEELALEAW----EPGGRDEEAERAFEALKQAVTAVRA-----LKAE 157
7 -6.150d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  5.IDIAKRIEDGI--QVQCSVAEYPEAITYLLEQYNRVEAEEARLSD-----------------ITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYRGLQFLDLIQEGN-IGLMKAVDKFE----------YRRGYKFSTYATRQAITRSIAD.................................................................................................................................................................................................................................................................................................................................................................................................................. 333
8 -6.120d4jq6a_ f.13.1.0 (A:) automated matches {Uncultured bacterium [TaxId: 77133]}  ali model 3D-neighbors follow..  7  12............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AIMLASTVFFFVERSDVPVKWKTSLTVAGLVTGVAF------WHYLYMRGVWIYAGETPTVFRYI-----------------------------LITVPLQIIEFYLIIAAVTAISSAVFWKLL--IASLVMLIGGFIGEAGLGDVVVWWIVGMIAWLYIIYEIFLGETA-------------KANAGSGNAASQQAFNTIKWIVTVGWAIYAWGYFGDGLNEDALNIVYNLADLINKAAFGLA... 211
9 -6.010d5g28a_ f.13.1.0 (A:) automated matches {Nonlabens marinus [TaxId: 1454201]}  ali model 3D-neighbors follow..  7  51..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ALSCIVMVSAGLILNSQAVMWTDAYAYVDGSYQLQDLTFSNGY-MATIPCLLLQLLIVLNLKGKELFSTATWLILAAWGMIITGYVGQLYEVDDIAQLMIWGAVSTAFFVV-MNWIVGTK------------IFKNRATMLGGTDSTITKVFWLMMFAWTLYVPAFMNNADGVVLRQLLFTIADISSKVIYGLM... 240
10 -5.940d5o9zg_ a.118.8.1 (G:) Pre-mRNA splicing factor 6 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  1.....KPFLGMPAPL---GYV--PGLGRGATGFTTRSDIGPARDANDPVDD---------RHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLKLQVARNLIMKGTEMCPKSLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLR............................................................................................................................................................................................................................................................................................................................................................................................ 389
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.