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Query: [GOU] KOG1442 GDP-fucose transporter, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAPLFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSVLYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLLCCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGYVNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTLSGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSALWWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKALast
1 -5.250d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  2  1.............................................................................................................................................................................................................................................................................................IDTSVSLWKGALKPLAAAGFIATFAGLIFHYIGIGPNKEVDDDEE....... 45
2 -3.820d3ag3l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  26  9............................NIPFSVENKWRLLAMGSGFAAPFFIVRHQL....................................................................................................................................................................................................................................................................................... 43
3 -3.710d2jp3a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD4 (CHIF) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  6  5..........................................................................................................................................................................................................................................................................DKGSPFYYD--ESLQLGGLIFGGLLC---------IAGIALALSGKCKCRRNHTPSSLPEKVTPLITPGSA 65
4 -3.690d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13  3..............................................................................................................................................................................................................................................................GNIVDLAVAVVIG--TAFTALVTKFTDSIITPLINRIGVNAQSDVGILR-INFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDT 100
5 -3.440d4c3hg2 b.40.4.5 (G:127-316) RNA polymerase I subunit A43, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  8  92............................................................................................................................................................................................................................................................................VDSNGEPIDGKLR--------------TVRNVHTTGRVVSVDGTLISDADEEGNGYNSSRSQAESLPIV 147
6 -3.420d3jbra1 f.14.1.2 (A:32-344) L-type calcium channel Alpha-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  11  26..............................................................................................ILLTIFANCVALAVYLPMPEDDNNSLNLGLEKLEYFFLTVFS-----------IEAAMKIIAYGFLFDAYLRSGWNVLDFIIVFLGVFTAILEQVNVIQSNTAPMSSKGAGLDV----KALRAFRVLRPLRLVSGVPSLQ-------------VVLNSIFKAMLPLFHIALLVLFMVIIYAIIGL.......................................................... 184
7 -3.390d2f2ba_ f.19.1.0 (A:) automated matches {Methanothermobacter marburgensis [TaxId: 79929]}  ali model 3D-neighbors follow..  11  54.............................................................................................DWVAIGLAFGFAIAASIYALGNISGCHIN---------AVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS------------FIFLQCAGIGAATVGGLGATAPFP--GISYWQAMLAEVVGTFLLMITIMGIAVDERA------------------KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDL-SIYVIGPIVAVLAALTYQYL................... 243
8 -3.300d3cx5h_ f.23.13.1 (H:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  1  20.........................................................................................................................................................................................................................................................QKGITSY--AVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLI-------------AGIYWYWWKNGNEYNEFLYSKAGREELERVNV 93
9 -3.270d1iw4a_ g.68.1.1 (A:) Ascidian trypsin inhibitor {Sea squirt (Halocynthia roretzi) [TaxId: 7729]}  ali model 3D-neighbors follow..  6  1..........................................................................................................................................................................................................................................................................AHMDCTEFNPLCRCNKMLGDLICAVIGDAKEEHRNMCALCCEHPGGFEYS..................... 50
10 -3.240d3mkua_ f.61.1.1 (A:) NorM {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  10  163.........................MVIGFIGLLLNNWIFVYGKFGAP---VATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRV-GHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM--QLLLFAAIYQCMDAVQVVAA-------------SLRGYAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF-----------WLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLA.. 458
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.