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Query: [R] KOG1492 C3H1-type Zn-finger protein, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNHLAHGRMTLFPANLKFFIIDFWFSGERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRRKRRWRMVIPYWFCLIWVLCVVFGFTFATLDVTGRVIKFDIWKRNGKSLFLVLast
1 -6.550d3jb9y1 g.66.1.2 (Y:49-171) Pre-mRNA splicing factor Cwc2 / Cwf2 / Prp3, zinc finger domain {Schizosaccharomyces pombe 972h- [TaxId: 284812]}  ali model 3D-neighbors follow..  18  1.....................................................................................................................................................................................................................PARKQIETRPWYNKWSGGMRQDPLKSQVKSETRCVISRDSGYTKADKNPGSFFCLYFAR-GMCSEGS-KCEYLHR.................................................................................................................................................................................................................................................................................................................................................................................. 88
2 -6.540d1y5ib_ d.58.1.5 (B:) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  126......................................................................................................................................................................................................................................................................PRSLI-----TG-ERMAKIEKGPNWEDDLPRLCEHCLNPACVAT-CPSGAIYKREEQDKCR----RMCI-TGCPYKKIYFNWKSGKSE-----------KCIF-CYPRIEAGVCS--ETCV-------------------------GRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVG--LTEAQAQEMYRYLAIANYE------------RFVVP---------C---GFTFGAIDVTSKT................ 508
3 -6.100d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  8  19.......................................................................................................................................................................................................................................................................TTQCL------TCHEEQATCTSCHAGYGWK--NTFDFKDKTKVDCLICHDVGAPVRDNCG----------SC---HFYGGGGDAVKHGDLDSSMAYPDKATDVHMDSDGNNQC---QNC---HTTEKHQISGNAMGVSPGGIDHIGCENCHDSAPHSNKKLNTHTATVACQTCHIPFFAK-----NEPTKMQWDWSTAGDDKPETVDQYGKHTYQKKKGNFVWEKMVKPQYAWYNGTANAYMAGDKMDSNVVTKLTYPMGDINDAKAKIYPFKVHTGKQIYDKKLNIFITPKTYGKGGYWSEFDWNLAAKLGMEANPTMLEKGIKYSGEYDFAATEMWW---------HMVSP---C-----C----LDWQALGYQGDPMK----PKH....... 441
4 -6.040d3hn3a1 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  57...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PVPSSFNDISQDWRLRHFVGWVWY--EREERWRVVLRISYAIVWV-----GYLPFEADISGTITYFDFFNYAGRSVLLY 200
5 -5.970d2idra_ d.86.1.0 (A:) automated matches {Wheat (Triticum aestivum) [TaxId: 4565]}  ali model 3D-neighbors follow..  20  64...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NKIEPKWEDPICANKWTISCG-----FWTLLAMIGEQFDFGDICGAVVRVAIWTKNAAN.... 135
6 -5.940d3u1la1 g.66.1.2 (A:3-121) Pre-mRNA splicing factor Cwc2 / Cwf2 / Prp3, zinc finger domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  17  56..................................................................................................................................................................................................................................................................................................................HSGKTRGDNDGQLFFCLFFAKGMCCGPKCEYLHHIPDEE......................................................................................................................................................................................................................................................................................................................... 95
7 -5.730d3zdha_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}  ali model 3D-neighbors follow..  16  14.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWS--DRTLAWNVSVPI----LWV-LAAYN-QLARVVSDGEVIKIGSWTHHSREISV. 152
8 -5.710d2jgba_ d.86.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  74...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EGIKPMWEDDANKNKWIIRLR-----CWLILAMLGEQFMVGEICGAVVIISIWNKTASD.... 145
9 -5.310d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]}  ali model 3D-neighbors follow..  13  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VPKTPAGPLTLSGQGSVGGRDVTSETLSLSPKYDAHGTVTVDQMYVRYQIPQRAKRYPITLIHW----WDEYFL-GYSTYVIDQSGR----------GRS.... 106
10 -5.300d2hr7a2 g.3.9.0 (A:157-311) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  3..........................................................................................................................................................................................................................................................................CP------GTAKGKTNCPCWTHSHCQKVCPTICKSHGCTAEGLCCHS-QPDDPTKCVFYLDGRCV-ETCPYHFQDHHKCKNSRRQGCHQYVIHNNKCIPECPS-SSNLLCTPLGPCP................................................................................................................................................................................................................................................................................... 153
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.