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Query: [K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCVVIFLKFLFSDNGNNQHGTEAAFGRLAQSYRIQDLLFIIVIFFRAIHIMMFHRPPSARPPLNHVDQLKSLQATALGKPGMRSQATEPQPIGNTVSPLEFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEPEKPKPARKRQRKPAANPRGSKKATAAAAAAAAAATNGVPPTVPTASPANNQQFPPNPMTSQFQQMSYPDVMVVGEPSMMGSEFGENDERTISRVENSQYDPNAMQMQSLGQGPNSSMNINGRNMMNQHHPGMQPPPGQQHMPPHSMGSQMPTSMHNPMHMPPGSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPMPNQMPGGMQMNQMPPPNYSQYTGGPPPQWPPPNSAMITGLast
1 -6.470d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  14  1MRV--ITDKLRRDSEQ-EH-VQLYSGTLPLEYVLQDFNYL-VISSKAEYPLMAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAEIAEYHKD-KLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSSGHSGYDR-FITGSKFELAFWEMAWRGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 215
2 -6.470d1qvia2 c.37.1.9 (A:6-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}  ali model 3D-neighbors follow..  10  67FCIAVYRRLIYTDSGKRKH-ADNAYQNMVTDRENQSCLIKVIMYLAKV--------------------------------ACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIA---------GADIETYLLEKSRVERNYHIFYQSNAIP-VMLVTPDSGLYSFINQG-------CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEM-KFKQRPREEQAESDGTAEAEKVAFLCGINAGDLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDR................................................................................................................................................................................................................................................................................................................... 381
3 -6.310d2qzca_ a.132.1.0 (A:) automated matches {Sulfolobus solfataricus [TaxId: 273057]}  ali model 3D-neighbors follow..  11  1..IVGNVENLINGVGE-KH-LKMRDGSLPLDYLIQDGKYV-ALLIASSKGPIDKVTKILNLVFSSRDKGLETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLGYSIVGDYVIDSPNEVYWSFYASTEYKKRIEAILYALDEVSITEDLLNFINSVRFEIGFWDASLR....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 205
4 -6.170d3ibxa1 a.132.1.0 (A:1-217) automated matches {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  13  1...MQVSQYLYQNAQS-SH-QGIGRGTLERDYIIQDYLYLLGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAELVIAQNLSQ-IPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEFITTSEYEYLFWDMAYQS...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 217
5 -5.720d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}  ali model 3D-neighbors follow..  12  44VLVAIYEQLIYGEDGQNMH-AEEAYKQMARDERNQSIIVYAMRYFATV------------------------------------------SGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRII---------GANMRTYLLEKSRVERNYHIFYQASAAL-TLRLGNANYFHYTKQG-------GSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNV-EFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMHWLCHRKLATATETYIKPISKLHAINARDALAKHIYAN................................................................................................................................................................................................................................................................................................................... 348
6 -5.520d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  12  1....MFSEELIKENEN-PH-IEMAENTIKKEWLVNDYYFVMALLMAKAPDDLLPFFAESIYYISKELEMFEKKAQELGISLNGEIDWRAKSYVNYLLSVEKAYYEAWKWV---RENLKERSPYQEFINHWSSQEFGEYVKRIEKILNSLAEKHGEFEFKEVSKFELIFWDIAY........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 206
7 -5.480d1yaka_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  2.....FSEECRSAAAE-VH-QGIGDGTLPIDYVLQDSYYLFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSYEVGEKL---LHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEV----RAKMKENFVSYYEYQFWGMAYRKEGWSD........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 219
8 -5.010d3no6a1 a.132.1.0 (A:1-227) automated matches {Staphylococcus epidermidis [TaxId: 176280]}  ali model 3D-neighbors follow..  9  1...MTFSKELREASRP-ND-QDLLAGKLSNQYLRADASYL-IYAMLIPKMSSMEDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHY-YAVIGKRAM--EDPKLNKESVTSKWFQFYSTEMDELVDVFDQLMDRLTKHCSETE----KKEIKENFLTIHERHFFNMAYINEK........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 220
9 -4.920d1z72a_ a.132.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 170187]}  ali model 3D-neighbors follow..  11  10.....TVGELLKSSQK-NH-KELFAGTIENKYLIQDYHFFACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQDLMYSALDWGSKD----LALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKNREDLTWNQAVALELAFFDIGY........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 217
10 -4.840d3jbra3 f.14.1.2 (A:1103-1395) L-type calcium channel Alpha-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  7  54AFTIIFLKLL-------------AFK-FGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESARISSA-RVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGK------IALVDGTQINRNNNFTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYAPGEEYTCGTNFAYYYFISFY--------MLCAFLIINLFVAVIMDNFDYLTRDWSIL........................................................................................................................................................................................................................................................................................................................................................................................ 292
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;