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Query: [A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTLast
1 -34.500d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  27.....................................................................................................................................................................................................................NSEDRSLNIFVKEDDKLT--FHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTR----------QRGTHAVVGVCTADAPLHVGSTEQSWGWDLGRNKLYHDAILKNDEAFLVPDKFLVALDM---DEGTLSFIVDQQYLGIAFR----GLRGKKLYPIVSAVHCEITMRYIGGLDPEPLP.................................................................................................................. 206
2 -21.000d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  97  1MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAAL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 37
3 -20.000d4uzwa1 a.140.2.1 (A:2-50) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  33  2.DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 49
4 -14.600d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  14.TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 51
5 -14.000d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30  11..VMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 52
6 -8.540d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  5.ELMKMKVKDLRDYLSLHDISTEMEKEELVLLVLGQ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 41
7 -8.240d1h9ea_ a.140.1.1 (A:) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  6.DPSVLTKDKLKSELVANNVTGEQRKDVYVQLYLQHLTARNRPPLPAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 56
8 -7.700d1h9fa_ a.140.1.1 (A:) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  8LDVTELTNEDLLDQLVKYGVNVGTTRKLYEKKLLKLREQGTESRSS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 57
9 -7.170d2b5lc_ d.384.1.1 (C:) SV5-V core {Simian virus 5 [TaxId: 11207]}  ali model 3D-neighbors follow..  10  1..............LIETGLNT-------VEYFTSQQVTGTSSLGKNTIPPGVTGLLTNAAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPADDKTVPGKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKENLMTRFIEEPRENPIATSSPIDFKRGRDTGGFHRRE....................................................................................................................................................................................................................................................................................................................................... 159
10 -6.240d2odci2 a.140.1.1 (I:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2.NYADLSDTELTTLLRRYNIPVGSTRRLYEKKIFEYETQRRR................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 46
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;