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Query: [T] KOG2290 Rhomboid family proteins, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQAFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLARGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRESVAKMSFRAAAALMKGRSVRDGTFRRARRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTYPDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAPQPKVRLRQEVVSTAGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFVKRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFIRSAREREKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDEPSSEDPHEWPEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTCIPFTDKFCEKYELDAQLHLast
1 -55.500d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  17  2..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LAQQGKITLILTALCVLIYIAQQLGFEDDIMYL-----MHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG-PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFVEMGNAAHISGLIVGLIWGFIDSKLRKNSLE............................................................ 189
2 -54.200d2xova_ f.51.1.1 (A:) GlpG {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  6................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VTWVMMIACVVVFIAMQILGDQEVMLW-----LAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG-PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFMSMANGAHIAGLAVGLAMAFVD..................................................................... 178
3 -8.470d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  65............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AISLIVVFLCLAALYESWSIPF-SVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLGLSAILIVEFAKD-EATLDAVRMRLRPILMTSLAFILGVMPLV-GTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRK...................................................... 223
4 -8.230d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  14..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YIAGAVFLIGSWLRYDYGQYTWRAASSQMRKGMNLASNLFHIILGIFVGHFFGMLTPHWMYEAWLPGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQC------------ALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMT-LFLLFPFSR............. 202
5 -7.640d3t6el_ f.26.1.1 (L:) automated matches {Blastochloris viridis [TaxId: 1079]}  ali model 3D-neighbors follow..  13  28.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PYFVGFFGVSAIFFIFLGVSLIGYAASQGPTWDSINPPDLKYGLG--AAPLLEGGFWQAIT--------VCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGL--------H-GGLILSVANPGDGDKVKTAEHENQYFRDVVFLASNIFLTGAFGTIASGPFWTRGWPEWWGWWLDIPF............... 271
6 -7.030d3rlff2 f.58.1.1 (F:261-503) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  2..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVG-MVLACLVQWEALRGKYRVLLILPYAVPSFISILIFGEINMMLSALGVKPAWFSDPTTARTMLIIVYMMILCMGLLKAIPDDLYEASAMDGA------------GPFQNFFKITLPLLIKPLTPLMIASFAFNF................................. 178
7 -6.950d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  11  4........................................................................................................................................................................................................................................................................................................................................................................................................................WATRLGLILAMAGNAV-GLGNF-----------------FPVQAAENGGGAFMIPYIIAFLLVGI---PLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAAD--GLNFLWTPDKDPGVWQIFFTLSLGFGAIDIVLSGLTAATLNEKAEVILGGSISIPAAVAFNLGGTFLGFLWFFLLFFAGLT-SSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGVFFGLTELIIFFWIFGADKAWEEIRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYII................. 487
8 -6.930d1fftc2 f.25.1.1 (C:25-203) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  4..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GFWIYLMSDCILFSILFATYAVLVNGTAGGPTFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMIYEFHHLIVNGMGPDRSGFLSAFFALVGT--------HGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFFLDVVWICVFTVVY................................ 175
9 -6.790d2jafa_ f.13.1.1 (A:) automated matches {Halobacterium salinarium [TaxId: 2242]}  ali model 3D-neighbors follow..  14  44................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAGEMVRSQWGRYWALSTPMIL----------LALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSALVTDWAASASSAGTAEIFDTLRVLVVVLWLGGLALVQSVGATVLDVFAKYVFAFILL.................................................................... 229
10 -6.780d5jsia_ f.13.1.0 (A:) automated matches {Candidatus actinomarina [TaxId: 1389454]}  ali model 3D-neighbors follow..  10  3................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LTYRLFMVATVGMLAGTVFLLASSREVKP-----EHRRGVYISALVCGIAWYHYQKMGASWESGSYDTGLVPLMFVEVLAVTRKGAAYNEAVRNWGIAATVMIGAGYYGETGSNEYWTGFVIAMATYVWLMRNLQAEGEGLKGDQAVAFENIKNLILVG---------------WIIY----PLG.............. 174
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;