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Query: [E] KOG2380 Prephenate dehydrogenase (NADP+), from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAETLITKPPLSLSFTSLSSMLPSLSLSTANRHLSVTDTIPLPNSNSNATPPLRIAIIGFGNYGQFLAETLISQGHILFAHSRSDHSSAARRLGVSYFTDLHDLCERHPDVVLLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDILCTHPMFGPQSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVREGCEMVEMSVTDHDKFAAESQFITHTLGRLLGMLKLISTPINTKGYEALLDLAENICGDSFDLYYGLFVYNNNSLEVLERIDLAFEALRKELFSRLHGVVRKQSFEGEAKKVHVFPNCGENDASLDMMRSEDVVVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNAMEQLERFHVAFESLKTQLFGRLHSQHSHELAKSSSPKTTKLLTSLast
1 -43.100d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  21  1............................................................................................................................................................................................................................................................................................................................................................................MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLI-PHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPYTDPEQLACLRSVLEPLGVKIYLC.............................................................................................................. 165
2 -40.500d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  24  3.....................................................................................................................................................................................................................................................................................................................................................................KTINSDIHKIVIVGYGKLGGLFARYLRASGYPISILDREDWAVAE-------------SILANADVVIVSVPINLTLETIERLK-PYLTENMLLADLTSVKREPLAKMLEVHTGA--VLGLHPMFGADIAS--------MAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQT.............................................................................................................. 152
3 -37.700d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  18  3.............................................................................................................................................................................................................................................................................................................................................................................NVLIVGVGFMGGSFAKSLRRSGFKIYGYDINPESSKAVDLGIIDTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLS-YILSEDATVTDQGSVKGKLVYDLENILGKR--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPKTDKKRLKLVKRVWEDVGGVVEYM.............................................................................................................. 171
4 -33.900d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  16  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SPELHDYVFGVVSHLPHAVAFALVDTLIHPEVDLFKYPGGGFKDFTRIAKSDPIMWRDIFLENKEVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEI.... 110
5 -33.800d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  12  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TPADHDQAVAWISHLPVMVSAALIQACAGEKKLAQNLASSGFRDTSRVGGGNPELGTMMATYNQRLLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNGDRDKYVE.. 114
6 -32.800d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  11  1............................................................................................................................................................................................................................NATEHDHNMTYIQALRHFSTFANGLHLSKQPALSSPIYRLELAMIGRLFAQDAELYADIIMDKSENLAVIETLKQTYDEALTFFENNDRQGFIDAFHKVRDWFGDYSEQFLKESRQL............................................................................................................................................................................................................................................................................................................... 124
7 -24.700d3fr7a1 c.2.1.0 (A:86-307) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  13  1............LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDKGSKSFDEARAAGFTETLGDIWETVSGSDLVLLLISDAAQADNYEKIF-SHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATT.................................................................................................................................................................................................................................................................................................................................................................................................................................. 222
8 -21.100d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  1.....................................................VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLN----LGDAVLVHCSG-------FLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGL-------EGDERGLPIVKKIAEEISGKYFVIPSEK................................................................................................................................................................................................................................................................................................................................................................................................................................ 153
9 -19.800d3daga1 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Methanocaldococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  11  36...........................EIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGVVIDEFDPKEVMEAHLSGNPESIMPKIREVVLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFKIFKDLGREDLNITSYHPGCVPEMKGQV-------------YIAEGYASEEAVNKLYEIGKIARGKAFKM.................................................................................................................................................................................................................................................................................................................................................................................................................................... 241
10 -19.400d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1.............................................................................................................................................................................................................................................................................................................................................................................PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMV---------GGVEDEFAAAQELLGCMGSNVVYCGA............................................................................................................ 161
11 -19.200d3g0oa1 c.2.1.0 (A:6-169) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  10  2............................................................................................................................................................................................................................................................................................................................................................................FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNQACANLLAEGACGAAASAREFAGVVDALVILVV-AQVRQVLEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTANLNMLDA-PVSGGAVKAAQGEMTVMA---------SGSEAAFTRLKPVLDAVASNVYRI.............................................................................................................. 162
12 -19.100d4dlla1 c.2.1.0 (A:29-190) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  12  2..........................................................................................................................................................................................................................................................................................................................................................................YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAGIAHLDT-PVSGGTVGAEQGTLVIMA---------GGKPADFERSLPLLKVFGRAT................................................................................................................. 159
13 -19.000d3ws7a1 c.2.1.0 (A:1-161) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  20  1............................................................................................................................................................................................................................................................................................................................................................................MRVGFIGLGIMGGPMATHLLKAGFLAAVYNRTREKTKPFAEAGVYVAESPADLAKRVDVVIVMVS-PDVEQVLPSGVVEGARPGLIVVDMSTNSPDWARKFAERLAQGIEFLDA-PVTGGQKGAIEGTLTIMV---------GGKEELFHRLLPIFKAMGRDIVYM.............................................................................................................. 160
14 -18.900d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  17  1....................................................LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGR---HVRGIYVDINNISPETVRMASSLIEKDAAIMGSVRASGRDAEEFMK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 137
15 -18.700d5je8a1 c.2.1.0 (A:1-163) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  17  1...........................................................................................................................................................................................................................................................................................................................................................................MKKIGFIGLGNMGLPMSKNLVKSGYTVYGVDLNKEAEASFEKEGGIIGLSISKLAETCDVVFTSLPSPRAVEAVAEGLFENGHSNVVFIDTSTVSPQLNKQLEEAAKEKVDFLAA-PVSGGVIGAENRTLTFMV---------GGSKDVYEKTESIMGVLGANIFHV.............................................................................................................. 161
16 -18.300d2uyya1 c.2.1.0 (A:262-429) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1......................................................................................................................................................................................................................................................................................................................................................................SITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVS-KAAKDLVPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILA---------AGDRGLYEDCSSCFQAMGKTSFFL.............................................................................................................. 166
17 -18.200d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13..........................................................................................................................................................................................................................................................................................................................................................................QGRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPKVEEQGLDVDTPAEVAKWADVVMVLAPDTAQAEIFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADVAVAMVAPKGPGHLVRRQFVDGKGVP----CLVAVEQDPRGDGLALALSYAKAIGGTRAGV.............................................................................................................. 176
18 -18.000d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  1............................................................................................................................................................................................................................................................................................................................................................................EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLE--RVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREGVTYLDA-PVSGGTSGAEAGTLTVML---------GGPEEAVERVRPFL-AYAKKVVHVGP............................................................................................................ 156
19 -17.500d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1..........................................................................................................................................................................................................................................................................................................................................................................AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAGILFVGS-GVSGGEEGARYGPS----------LMPGGNKEAWPHIKTIFQGIAAKVGTGEP............................................................................................................ 168
20 -16.200d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  13  1....................................................MRVALLGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGKNEDAAEACDIAVLTIPWEHAIDTARDLKNIL--REKIVVSPLV-ERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVC--------GDDDESKKVVMSLISEIGLRPLDAGPLSNSRLVESLTPL..................................................................................................................................................................................................................................................................................................................................................................................................................... 194
21 -15.800d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}  ali model 3D-neighbors follow..  15  1...................................................SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIA-SYISEGQLIILNPG-ALEFRKILRENGAPEVTIGETSSSERPGQVTVNAIKGAMDFACLP-----AAKAGWALEQIGSVLPQY........................................................................................................................................................................................................................................................................................................................................................................................................................................... 180
22 -15.300d1yjqa2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1....................................................MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNL-NESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLA-STLPVTTPILLIHN-----MGTIEELQNIQQPLLMGTTTHAARRDGNVIIHVAN-----ITHIGPARQQDGDYSYLADILQTVLPDV....................................................................................................................................................................................................................................................................................................................................................................................................................................... 163
23 -15.000d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  18  1....................................................MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLEREIAEQLALPYAMSHQD-LIDQVDLVILGIKPQLFETVLKPL-----HFKQPIISMAA----SLQRLATFVGQDLPLLRIMPQILQSSTAL---------------TGNALVSQELQARVRDLTDSFG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 145
24 -15.000d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  13  1....................................................MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRIL-PYLKDQYIVLDFDNSVLTVPEAVWRLKHDLRERTVA--ITGPAIAREVAKRMPTTVVF-------SSPSESSANKMKEIFETEYFGVEVTT................................................................................................................................................................................................................................................................................................................................................................................................................................... 180
25 -14.900d1xc2a3 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}  ali model 3D-neighbors follow..  16  1....................................................MNVYFLGGGNMAAAVAGGLVKQGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVKPQDMEAACKNIR----TNGALVLSVAA----SVGTLSRYLGGTRRIVRVMPKIGLGVSGM---------------YAEAEVSETDRRIADRIMKSVGLTV....................................................................................................................................................................................................................................................................................................................................................................................................................................... 149
26 -14.800d3k96a1 c.2.1.0 (A:3-180) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  11  3...........................................................................................................................................................................................................................................................................................................................................................................KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAE-LKAYCDLKASLEGVTDILIVVPSFAFHEVITRMK-PLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANL-----PTAVSLASNNSQFSKDLIERLHGQRFRVYKND............................................................................................................. 178
27 -14.800d3tria1 c.2.1.0 (A:2-162) automated matches {Coxiella burnetii [TaxId: 777]}  ali model 3D-neighbors follow..  15  1..................................................NTSNITFIGGGNMARNIVVGLIANGRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAV----TTPLIEKWLGKASRIVRAMPSVRAGATGL---------------FANETVDKDQKNLAESIMRAVGLVI....................................................................................................................................................................................................................................................................................................................................................................................................................................... 158
28 -14.500d2izza1 c.2.1.0 (A:1-164) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1....................................................MSVGFIGAGQLAFALAKGFTAAGVLASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTVVREGATVYATG---------------THAQVEDGRLMEQLLSSVG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 157
29 -14.500d2rcya1 c.2.1.0 (A:2-156) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  12  2..................................................ENIKLGFMGLGQMGSALAHGIANAN--IIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIK-PYLSSKLLISICGGLN---IGKLEEMVGSENKIVWVMPLVGEGSFIY---------------CSNKNVNSTDKKYVNDIFNSCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 148
30 -14.400d4e12a1 c.2.1.0 (A:1-189) automated matches {Acinetobacter baylyi [TaxId: 202950]}  ali model 3D-neighbors follow..  14  2.................................................TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDAAAQKALGGIRYSDDLAQAVKDADLVIEAVPLDLKRDIYTKLG-ELAPAKTIFA--TNSSTLLPSDLVGYTGRGDKFLALH-FANH-----------VWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEK................................................................................................................................................................................................................................................................................................................................................................................................................................ 188
31 -14.400d1z82a1 c.2.1.0 (A:2-166) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  12  1...................................................EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSITVRATNDLEEIKKEDILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG------LSGPSHA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 130
32 -14.300d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  25............................................................................................................................................................................................................................................................................................................................................................................KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDE-ACQEGNIFVTTT---GCIDIILGRHFEQMKDDAIVCNIGH........................................................................................................................................................................................ 112
33 -14.000d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}  ali model 3D-neighbors follow..  16  50............................................................................................................................................................................................................................................................................................................................................................................ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQD-LLFHSDCVTLHCGLNHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGLDVHESEPFSFSQG--------PLKDAPNLICTP...................................................................................................................................... 189
34 -13.900d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}  ali model 3D-neighbors follow..  12  45............................................................................................................................................................................................................................................................................................................................................................................MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGGDVWFPQPA----------KDHPWRTMPYNGMTP...................................................................................................................................... 184
35 -13.800d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  13  1.....VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSPETRYFFNKATIKSLPQGAIVVNTAR-NELVVAALEALAYAGFDVFAGEPNINEGYYDLPN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 181
36 -13.200d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  13  43............................................................................................................................................................................................................................................................................................................................................................................EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFT------NSLEEALREARAAVCALPLNHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND----KDAEFFSLPNVVATP...................................................................................................................................... 177
37 -13.000d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1................................................KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDEFVEKTLSTIATSTDAASVVHSTDLVVEAINLKVKNELFKRLD-KFAAEHTIFA--SNTSSLQITSIANATTRQDRFAGLH-FFNP-----------VPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK................................................................................................................................................................................................................................................................................................................................................................................................................................... 189
38 -12.900d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  45............................................................................................................................................................................................................................................................................................................................................................................KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD----LLNMSDVVSLHVPENSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKIDVFPTEPATNSDP-----FTSPLAEFDNVLLTP...................................................................................................................................... 184
39 -12.800d1evya2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}  ali model 3D-neighbors follow..  5.........................................................................................................................................................................................................................................................................................................................................................................LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK-ITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKLIAYAKEKQVPVLVCTGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGV-----FTCVSIASADINVARRLQRIMST...................................................................................................................... 179
40 -12.500d5bsea1 c.2.1.0 (A:3-169) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  13  5................................................PADSYTLGFIGAGKMAESIAKGAVRSGVLTAIHSNPARRTAFESIGITVLSSNDD-VVRDSNVVVFSVKPQLLKDVVLKLKPLLTKDKLLVSVAAGIKMKDLQEWA----GHERFIRVMPTVGEAASVMSLG---------------GAATEEDANLISQLFGSIG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 160
41 -12.500d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  16  45............................................................................................................................................................................................................................................................................................................................................................................KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS---DDLLARADFISVHLPKTETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGLDVFATEPC----------TDSPLFELAQVVVTP...................................................................................................................................... 181
42 -12.200d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  1............................................................................................................................................................................................................................................................................................................................................................................MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSSGTTDFKKAVLDSDVSFICVGLGYIETVCREIGFAIREKSETVVVRSTVLPGTVNNVVIPLIEDCS-VGTNPEFLRESTAIK------YDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKT............................................................................................................. 202
43 -12.100d1x0va1 c.2.1.0 (A:2-193) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1..........................................................................................................................................................................................................................................................................................................................................................................ASKKVCIVGSGNWGSAIAKIVGGNDPRVTMWVFEEDIGGKKLTEIINTQHENVQAAEDADILIFVVPHQFIGKICDQLK-GHLKANATGISLINGLKLISEVIGERLGIPMSVLM-----GANIASEVADEK-----FCETTIGCKDPAQGQLLKELMQTPNFRITVVQ............................................................................................................. 191
44 -12.100d2v6ba1 c.2.1.0 (A:22-164) automated matches {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  13  1....................................................MKVGVVGTGFVGSTAAFALVLRGSELVLVDRDEDRAQAEAEDIAHAAHGGHSELADAQVVILTAGANQ---------KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 119
45 -12.000d4j0ea1 c.2.1.0 (A:1-198) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  11  3...........................................TAKCAMQNIRNVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKAFVTLTMSRIKTCNNVSTAVADADLIIEAANIDLKRGIFAQIE-QSCKKDSILT--TNTSSFLLEDVAKGLQDKTRFGGLH-FFNP-----------VPVMKLLEVIRSDDTSDETYATLIKFGTAVGKTTVACK................................................................................................................................................................................................................................................................................................................................................................................................................................... 195
46 -11.900d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}  ali model 3D-neighbors follow..  17  1...................................................ARKIGIIGLGNVGAAVAHGLIAQG-DYVFIDANEAKVKADQIDFQDAMANLEAALADADVVISTLGNIKLQQ-----DNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 125
47 -11.900d4m1qa1 c.2.1.0 (A:3-144) automated matches {Bacillus selenitireducens [TaxId: 439292]}  ali model 3D-neighbors follow..  14  1.................................................TKTSRVVIIGTGAVGSSYAFSMINQNDEMVLIDLDKRKTEGDAMDLNHGIAGDYGDCKSADIVVITAGAAQ---------KPGETRLDLVEKNANIFKGIVDQVMGSGFNGIFIIATNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 122
48 -11.900d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  14  1..................................................ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTAALDAEVAKHDLVISLIPYTFHATVIKSA----IRQKKHVVTTSYVSPAMMELDQAAKDAGITVMGXYS........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 126
49 -11.600d3nepx1 c.2.1.0 (X:22-163) automated matches {Salinibacter ruber [TaxId: 309807]}  ali model 3D-neighbors follow..  14  1....................................................MKVTVIGAGNVGATVAECVARQDKEVVMVDIKDGMPQGKALDMRESSTNDYGPTEDSDVCIITAGLPR---------SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 121
50 -11.600d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  15  1.................................................APKAKIVLVGSGMIGGVMATLIVQKN-DVVLFDIVKNMPHGKALDTSHTNSNTYDDLAGADVVIVTAGFTKAPGK----SDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 128
51 -11.600d4ajjc1 c.2.1.0 (C:1-159) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  1.................................AALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKD-ELALVDVIEDKLKGEMMDLQHGSSKDYSVTANSKLVIITAGARQ---------QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 139
52 -11.500d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}  ali model 3D-neighbors follow..  12  1................................................AKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINETPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVNPKVKQAVLAEVE-NHVREDAILA--SNTSTISISLLAKALKRPENFVGMH-FFNP-----------VHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN................................................................................................................................................................................................................................................................................................................................................................................................................................... 183
53 -11.400d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}  ali model 3D-neighbors follow..  17  1...................................................PTKLAVIGAGAVGSTLAFAAAQRGREIVLEDIAKERVEAEVLDMQHGSSDDPEICRDADMVVITAGPRQ---------KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 121
54 -11.300d1saya1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}  ali model 3D-neighbors follow..  12  25............................................GGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET-LYSNSAEIETAVAEADLLIVLVPGRRAPILVPASLVEQMRTGSVIVDVAV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 133
55 -11.300d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors follow..  20  44............................................................................................................................................................................................................................................................................................................................................................................QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PELEKKGYYVDS---DDLYKQADVISLHVPDPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG........................................................................................................................................................................ 149
56 -11.100d2dapa1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  16  1.................................................MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKH-ADDVDVLFLCMGAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVST..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 117
57 -11.000d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  1..................................................QPLNVAVVGAGSVGEALVGLLDERDFHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAA----AEVSRAHAERARAAGCSVIDLSG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 96
58 -11.000d2x5oa1 c.5.1.0 (A:1-93) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  13  1...............................................ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 90
59 -10.600d2hk8a2 c.2.1.7 (A:106-266) Shikimate 5-dehydrogenase AroE {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  14  15................................................EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDII----KETKLLKKAKEKGAKLLDGLPML...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 134
60 -10.400d2hmta_ c.2.1.9 (A:) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  17  1...........................................................................................................................................................................................................................................................................................................................................................................NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWV----------KAQNYYHHKVLEKIGADRIIHPEKDM........................................................................................................................................................ 123
61 -10.200d4jcoa1 c.2.1.5 (A:22-162) automated matches {Haloarcula marismortui [TaxId: 2238]}  ali model 3D-neighbors follow..  11  1....................................................TKVSVVGAGTVGAAAGYNIALRDDEVVFVDIPDKEDDTVGQAADRVRQGGYEDTAGSDVVVITAGIPR---------QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 122
62 -10.100d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  12............................................................................................................................................................................................................................................................................................................................................................................TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCARA....................................................................................................................................................................................... 106
63 -10.100d1j5pa4 c.2.1.3 (A:1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  15  1....................................................MTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRL--------DEFQVPSDVSTVVECASPEAVKEYSLQIPVNYIIISTSAFADEVFRERFFSELKNFFPSGXSMLTVYSILRTLRNLESKIIFG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 131
64 -10.000d4r3na1 c.2.1.3 (A:2-127,A:330-358) Aspartate beta-semialdehyde dehydrogenase {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  15  2....................................................YTVAVVGAGAVGAQMIKMLEESTLRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAG----SSTSAKYAPYAVKAGVVVVDNTS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 95
65 -9.960d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  11  22............................................TAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-RKKQAEAVLKELVKTDIAIALIPGKPAPVLITEEMVTKMKPGSVIIDLAV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 152
66 -9.810d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  2....................................................KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRQLARHPAFVNRDVFPIIA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 78
67 -9.780d3phha2 c.2.1.0 (A:105-263) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  16  7............................................LSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRS--SRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNEL-KEVLKGYFKEGKLAYDL--AYGFLTPFLSLAKELKTPFQDGKDML...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 130
68 -9.780d2dt5a2 c.2.1.12 (A:78-211) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}  ali model 3D-neighbors follow..  13  1.................................................NRKWGLCIVGMGRLGSALADYPGGESFELRGFFDVDPEKVGRPVRIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKG---ILNFAPVVLEVPKEVA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 106
69 -9.520d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  30....................................................KKCIVINRSEVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKYSEDLLKKCSLDSDVVITGVPSENYK-----FPTEYIKEGAVCINFAC------KNFSDDVKEKASLYV--PMTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 148
70 -9.520d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  11  1............................................................................................................................................................................................................................................................................................................................................................................MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSSIKATLDSKAAYKEAELVIIATQHVETVIKEVL--SVNSHATLIIKSTIPIGFITEMRQKFQT---------IFSPEFLRESKALYDNLYPSRIIVEENDSPKVKADAEKFALLLKSAAKKNNVPV.......................................................................................................... 192
71 -9.470d3fi9a1 c.2.1.0 (A:2-147) automated matches {Porphyromonas gingivalis [TaxId: 431947]}  ali model 3D-neighbors follow..  1...............................................SYLTEEKLTIVGAGMIGSNMAQTAAMMR-NLCLYDPFAVGLEGVAEEIRHCGSDIKEALTDAKYIVSSGGAPR---------KEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVI-FNPA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 126
72 -9.440d1j6ua1 c.5.1.1 (A:1-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  1....................................................MKIHFVGIGGIGSAVALHEFSNGNDVYGSNIEETTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVP.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 85
73 -9.390d2g1ua_ c.2.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  1................................................KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKI-----FEENGIKTICPAVLMIEKVKE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 132
74 -9.380d3hhpa1 c.2.1.0 (A:1-145) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  18  1....................................................MKVAVLGAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDFSGEDATPALEGADVVLISAGVAR---------KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPV....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 121
75 -9.280d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  16..................................................KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMFPKAFIDNASVAFDVV-AMPVETPFIRYAQARGKQTISGAAVI...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 137

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;