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Query: [R] KOG2897 DNA-binding protein YL1 and related proteins, from COG1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGDNLast
1 -8.100d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  2............................................................................................................................................................................................................................................................................EPAGPCGFCPAEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFY....................................... 46
2 -5.020d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  16  65...........................................................................................................................................................................................................................................................................................QRLWNDKTKTPY----LYHAQNGLFVTY........................................ 88
3 -4.770d4c3hg2 b.40.4.5 (G:127-316) RNA polymerase I subunit A43, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  8  2.........QVGDVLEGYIFIQSASHIGLLIHDAFNNDVEEDADVINTDENNGNNNNEDNKDSNGGSNSLGKFSFGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSVDGTLISDADEEGNGYNSSRSQAESLPIVSNKKIVFDDEVSIENKESHKELDLPEVKEDNGSEIVYEENTSE......................................................................................................................................................................... 190
4 -4.750d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  7  47.VPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGGDACKDDFDHDSVPDIDDICPENVDISE................................................................................................................................................................................................................................................................................. 124
5 -4.560d1p0ya1 a.166.1.1 (A:311-482) RuBisCo LSMT C-terminal, substrate-binding domain {Pea (Pisum sativum) [TaxId: 3888]}  ali model 3D-neighbors follow..  10  95.......................................................................................................................................KSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDL.................................................................................................................................................... 162
6 -4.470d2wbma2 a.5.8.0 (A:88-162) automated matches {Methanothermobacter thermautotrophicus [TaxId: 187420]}  ali model 3D-neighbors follow..  21  24............................................................................................................................................................................................................................................................................................EAINPQNGLPHPPKRIEKAMEEA............................................ 46
7 -4.470d1wh2a1 d.76.1.1 (A:8-72) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  26  15.............................................................................................................................................................................................................................................................................................YKDPQGLVPFSLTQLKAWSDAEY........................................... 39
8 -4.340d4qi3a1 b.1.9.0 (A:2-208) automated matches {Myriococcum thermophilum [TaxId: 455373]}  ali model 3D-neighbors follow..  14  1.......................................................................................................................................................................................................................................................................................NNVPNTFTDPDSGITFNTWGL................................................... 21
9 -4.330d4ogqb_ f.32.1.1 (B:) automated matches {Nostoc sp. [TaxId: 103690]}  ali model 3D-neighbors follow..  30  59.....................................................................................................................................................................................................................................................................................AMTGEPAPFATPLEILPWYLYPVFQILRSLPNK......................................... 93
10 -4.300d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2.............................................................................................................................................................................................................................................................................SETITVNCPTCGKTVVWGEISPFRPFCSKRC-QLI------------------DLGEWAAEEKRIPSSGDLSESDDWSEEPK 64
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.