FFAS03 results for COG3216

Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 .`
#	Score	Template	Links and tools	%id	First	`MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGG`	Last
1	-102.000	`[S] COG3216 Uncharacterized protein conserved in bacteria`	`ali follow..`	100	1	`MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGG`	209
2	-10.500	`[R] KOG4821 Predicted Na+-dependent cotransporter`	`ali follow..`	13	112	`.............................................NDPKIDDWVLIGLLTATCP----TVASNVIMTTNAGGNSLLCVCEVFIGNAFITPALVQMFTNRAPFAYGNPATGNGIGALYGRV-----MKQVGLSVFVPLFVGQVI........................................................`	215
3	-10.200	`[P] KOG1558 Fe2+/Zn2+ regulated transporter`	`ali follow..`	11	203	`.......................................VLEIGIVVHSVIIGISLGA--------SIDTIKPLMAALSFHQFFEGLGLGGCISLTVLMATFFSVTAPLGIGI-----------------LGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLH.......................`	334
4	-9.490	`[S] COG3597 Uncharacterized protein/domain associated with GTPases`	`ali follow..`	11	2	`.............................................CKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKM-NDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFI---------------------VVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTI..`	142
5	-9.200	`[R] COG0385 Predicted Na+-dependent transporter`	`ali follow..`	13	92	`.................................................SQSPFYTGIYLCVLP----TVQSSIAFTSMARGNVSAAVVSASASN---IFGMFLTPLLVGLLFAIKGGGGISMDA----------LESILLQLLAPFVLGQVL........................................................`	180
6	-8.690	`[S] COG5197 Predicted membrane protein`	`ali follow..`	8	155	`.............................................................YMPIMGLVTYILIWNTQQLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELLCYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDIHVSISKSTVKK..........`	293
7	-8.640	`[D] COG0239 Integral membrane protein possibly involved in chromosome condensation`	`ali follow..`	11	6	`.................................................VGIFGALGGMCRYFPSATLAVNLI--------GCFLLAFIMPFLAEKSRISLVLLNGIGTG--FIGAFTTFSAFSVDTIELLQQGEVVLAIS-----YILVSLIGGLVMVKFGRRFSNKLLRRGAHH.................................`	127
8	-8.620	`[O] COG2370 Hydrogenase/urease accessory protein`	`ali follow..`	10	1	`.....MAGSPRSRCERQQFQEGIMLKRLSLAAAALGLTTLPAFAHLNPEEHGSFMAGVS----PFFGADHILAMVAVGIWASQVGTMAVGFLMA-PFVEPAILASVIGLGLLVAMAARLPTAAAAAVVGAFALFHGHAHGGELALQFGIGFMIATAILHLAGIALGLGIARF.....................................`	191
9	-8.590	`[S] KOG4474 Uncharacterized conserved protein`	`ali follow..`	9	120	`................................................RNLVLMMTGYLLRIVELLFHHVVVLSAFTICLFYDLMLGIVVAGLLMELNSIFLNIITLVVFRLIVN----------VYMIYFVFASFSMSPWYIASTICVLILCLASSNMVLTYRLLAADGFCGASRQRQVPARVETEVPPEHQNLVKQVVQGSDQNDG.`	306
10	-8.580	`[R] COG3030 Protein affecting phage T7 exclusion by the F plasmid`	`ali follow..`	7	5	`.....................................................................PFIAIFLYVYIEISIFIQVAHVL--GVLLTLVLVIFTSVIGMSLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVS--LIIAGLLLGFFTDFLGLLLLLPPVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGE....`	139

FFAS is supported by the NIH grant R01-GM087218-01

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