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Query: [S] COG4241 Predicted membrane protein, from COG1018

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGKLast
1 -100.000[S] COG4241 Predicted membrane protein  ali follow..  100  1MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGK 312
2 -14.600[S] COG3859 Predicted membrane protein  ali follow..  18  16..NVRLLTEIAFMAALAFIISLIPNT---YGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITGHAYIL-YLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIF............................................................................................................................................................................................. 141
3 -12.300[S] COG3601 Predicted membrane protein  ali follow..  14  5..SMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLFSDIPALIGGLLFGPLAVILVELIKNVLLYIVSGPVGELANFINGIFYVLPIYYLFHWFRSTKGMVLSTAVGTLVMTGAMVIFNYFVLLPFYIKLGGL---------------------------PADTDVAWLVTYTIIPFSLLKGVIVSAVFLILYSRLK.................................................................................................................. 179
4 -8.220[S] COG4684 Predicted membrane protein  ali follow..  14  10.LQTRQITMVGLLFAVTIVLGATGLGFLPIPPFKTTIMHIPVIIGGIVGGPIVGAITGLLFGIFSIIQA----VVSVLPRVLIGIVSYYVIKKKSEKAGVVTGIIAGSFTNTLGVLAMIYLLYI............................................................................................................................................................................................ 145
5 -8.110[S] KOG4647 Uncharacterized membrane protein  ali follow..  5  123...............................................................................................PFWKRAVAETIDMFILFIVKIIITFGVVNLFNIEFDEDVIRRTLDQEDLFSNFFDTSLDFISMSTDLLLIEMLTKFIVCCYEALWTYLYQGATPGKSLMKIRIYYVEAVMPLQGPPLPQFVLQPQREPMRALLYPPQTPSLMRSFARALIKNLGMTLLFPICVLMVFFKNNRTAYDVLTKTIVV................................. 306
6 -7.640[S] COG5594 Uncharacterized integral membrane protein  ali follow..  13  371.RRGKKTISNTILTLMIIFWAFPVAVVGCISNVNYLIEKVHFLKFIDH---MPPKLLGIITGILPSVALSILMSLVPPFIKFLGKFGGALTVQEIE----------NYCQNWYYAFQVVQVFLVTTMTSAATSAVVQVIKEPASSMTLLASNLPKASNFYISLLQGLSIPGGALLQIVTLLLSKVLGRIFDNTPRKKWNRWNQLSAPSWGTVYPVYSLLVTIMICYSIIAP-------IIIGFAAVAFVLIYFAYSYNLIYVLGHNADYPRALFQVFVGLYLAE------VCLIGLFVL............. 649
7 -7.440[S] KOG4502 Predicted membrane protein  ali follow..  9  497................................................................................................................................EASMRQLKKTLRKIREVVKIKTSSTTADVTTTNKPKTVKRSSLVYQILLSLQKTLSIVYFLVIFIL-----------KGAILPYPRYVRVMEFFVIIPFIPIEYLRINWGSRG-NLLLALSTVLSIPIIIILVYLEFFQNYVLFIEEIFTYVMGFFVILETLLSLVLTITF............. 663
8 -7.280[P] KOG4505 Na+/H+ antiporter  ali follow..  8  2AWSQVEISKPHLAYAIIGGFTSL---FMLCSLIIKEKLFLGEATMATATGLIFGPYVAKLFVP-DYITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLESL--AIAACITATDPVLASSIVGKGKFARRVPGHLRNMLLAIPFLYLAIYLIIECTFGCVLGAIIGVIARKMIKFSERRGLMDRESFLVFYFVLALFCGGIGTIDDLLVSFCAGAALLNLSFFVYVGAIMPWPQFHMPHMDLSVWRLVVICILIARRIPAVLLFKSFVPDIINWREA...... 361
9 -7.180[P] KOG3684 Ca2+-activated K+ channel proteins (intermediate/small conductance classes)  ali follow..  8  277FEKRKRLSDYALIFGMFGIVVMVSMFSLALKCLISLSTIILLGLIIAYHTREAQLFIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYL------------IARVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRACERYHDQQDVTSNFLG------AMWLISITFLSIGYGDMVPHTY---------GVCLLTGIMGAGCTALVVRKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKK 591
10 -6.890[U] KOG1278 Endosomal membrane proteins, EMP70  ali follow..  13  364..................................VFRTPSKSMLLSILVGSGMQLFLMVMCSIFFAAVGGSLPTVMFVLYALFGFVGSYASMGVYKFFRGPYWKANMILTPILLPGAIFLLIVIMNFFLLFAHSSGVIVSVPLSFAGSIVAHKQCNWDEHPTKTNQIARQIPQATLIAGIFSFGSIAVELYFIYSSL------------WFNKIFYMFGFLLFSFLLLT-------LTTSLVTILITYYSLFIIGGLGCHSILFTKFKLGGVITVVLYLSLIISALCCVVTGAIGFFSSMFFIRKIYSAIK. 670
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.