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Query: [A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain, from COG1018

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTLast
1 -157.000[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  100  1MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQT 507
2 -37.000[D] KOG4259 Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain  ali follow..  15  4SDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDSAIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTAT............................................................................................................................................................................................................................................................................................................... 207
3 -36.100[BK] KOG2626 Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2  ali follow..  13  90VQMCVTVLATLSAERLKADGKLSAEHVPLKDEIVPYMNEN-----YMLTAIKQKKEWHQNLAPTLLKEKNIFVQHNDDDDLFALAEKNLSLLGPLHEAVKLIGKRPIERENREPRHIELPPIEGPKTRGASKRRHAEAPVTGKKQKLAADYSSTAAPNGVQIDIPFSKDNYRYYLTEVDPNVPEDPAWNQNQSSAYVIPSFHYRELLNPTVNVSSNDRAFQLSINGNSITGFE---------YSMARASHGVSKGTWYFEVNFDDQ----------PDDSHIRIGWSQSYASLQVGYNKFSYGWRSKHGTKFHEAKKYHFGGFKQGDVLGCLIHLPVDKGSYIEFFHNGKSCGKAYENIYAGA----YYPSIIFKSATATMNLGP-KFRNLPRG................................................................................................................. 517
4 -31.000[S] KOG4030 Uncharacterized conserved protein, contains SPRY domain  ali follow..  19  10................................................................................................................................................................................................RCCRDGGTGHIPLKEMPAVQLDTQHMGTDVVIVKNGRRICG---------TGGCLASAPLHQNKSYFEFKIQ-------------STGIWGIGVATQKVNLNLGRDMHSLVMRNDGALYHNNEEKPANSLPQEGDVVGITYD-----HVELNVYLNGKNMHCPASGIRGT-----VYPVVVDDSAILDCQFS--EFYHTPPP................................................................................................................. 184
5 -27.700[R] KOG1477 SPRY domain-containing proteins  ali follow..  14  6................................................NEALDSSFGNLESPNHDFKVGDPNMVPTPPMDSDSAAISLAFLISLSITFAILMLILVVIAAYVTFCGDDESEYDEENALGTRTSGTLHSLFGKKHSGILLDSSFASPGGFDDEIVLQERELEELPKMSAYEVELYIRAKEFQMMSPPMVKDFGTYLDSDDQQFIKDRGIQSDNIDEYGNFLPSFIVQDKLDIQFSKTVMNYPLRKDAVYFEVKI--------FRHIQKSNSIFSIGLTTVPYPYFPGMAKYSIAYESTGKLRINNPFSTLLPKLEEGDTVGFGYRYKT---GTIFITHNGKKLMDVTQNIGID-----LFIGIGAFNAAYTRTYTRDGLLE..................................................................................................................... 352
6 -26.300[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  12  31..LSDLRVIDLRADVRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEESSEL.......................................................................................................................................................................................................................................................................................................... 237
7 -23.300[R] KOG3953 SOCS box protein SSB-1, contains SPRY domain  ali follow..  13  2...................................................................................................................................................SDVEVDPQQAHPHPIAAIAPRRRRPTGRRGGVTGGLSSGSLDASSSTSPPPRFCPLPNGVEDNWTWSKRHRSKEVVLRGPNSRTVHFHPNWSK--TAGVQGKRSLNNGRHYWELHVSQR----------VFGTSIMFGIGTKSARLHLGENEHGWGLSHKGVLWHEGVALLYTKRFNQPTQIGVLFDG---IEGTLTFYKDGKCLGVAFRGLDQIDEPLYPIVCSTAAKTEMTL.............................................................................................................................. 230
8 -16.100[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  9  51.DLLKLKPKDLIFYLQSKHISTEGEKEELVGLVLTHVAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFFSNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQATTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSERVSISLK.......................................................................................................................................................................................................................................................................................................... 260
9 -14.500[T] COG5432 RING-finger-containing E3 ubiquitin ligase  ali follow..  11  276INFTSMTQSQIKQKLSSLGLSTNGTRQNMIKRFCDSLEPVDEAELKRQLLSWDVSHNKTPQNSSNKGGISKLMIMKSNGKSSSYRKLLENFKNDKFNRKGWMVMFRKDFARLIREAKMKIKTGSSDSSGSVGHSNDGDGVEKVQSDQGTEDQQMEKDQDTVINEDRVAGERNLPNEDSTDADLSRELMDLNEYSKDPPGNN.................................................................................................................................................................................................................................................................................................................. 487
10 -14.500[L] KOG0287 Postreplication repair protein RAD18  ali follow..  11  276INFTSMTQSQIKQKLSSLGLSTNGTRQNMIKRFCDSLEPVDEAELKRQLLSWDVSHNKTPQNSSNKGGISKLMIMKSNGKSSSYRKLLENFKNDKFNRKGWMVMFRKDFARLIREAKMKIKTGSSDSSGSVGHSNDGDGVEKVQSDQGTEDQQMEKDQDTVINEDRVAGERNLPNEDSTDADLSRELMDLNEYSKDPPGNN.................................................................................................................................................................................................................................................................................................................. 487
11 -12.900[M] COG3064 Membrane protein involved in colicin uptake  ali follow..  6  2.....SKATEQNDKLK---------RAIIIS-IWSSFDEHIEASAGGGGGSAIDAVMVDPGAVVQQYNRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQERLKQLEKERLAAQEQQKQAEEAAKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAKKKAEAEAVKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAAEAKK.......................................................................................................................................................................................................................................................................................................... 206
12 -12.300[R] KOG4095 Uncharacterized conserved protein (tumor-specific protein BCL7 in humans)  ali follow..  10  5.........SVRAETRSRAKDD-------IKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKSKSNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDSGAPPLKRFCVDQPTVPQ.......................................................................................................................................................................................................................................................................................................... 197
13 -12.000[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  11  328...TRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD............................................................................................................................................................................................................................................................................................................ 531
14 -11.800[R] KOG2295 C2H2 Zn-finger protein  ali follow..  8  223...LQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKI....................................................................................................................................................................................................................................................................................... 447
15 -11.800[K] KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A  ali follow..  6  30..LKKLSTLPITVDLAETGVEHVGSFADLVAQWKKLVPVERNAEPDEQDFEKSNSRKRPRDALQKEEEMEGDYQETWKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPGKGHSNAFQDRLGASQERHLGEPHGKGVVSQNKEHKSS.......................................................................................................................................................................................................................................................................................................... 248
16 -11.500[R] KOG2897 DNA-binding protein YL1 and related proteins  ali follow..  10  1..........MAASRSRRN--NAG------NKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEEN................................................................................................................................................................................................................................................................................................................ 185
17 -11.400[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  9  1............................MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA------------------------------------------------------IPRKGLFFEHDLRGQTQE------RPKGRQRKLWKDEGRWEHD-QAPKSRQELIALYG------DI................................................................................................................................................................................... 244
18 -11.400[R] KOG1334 WD40 repeat protein  ali follow..  9  4.....LKAAICADDLIVMVVAS----LILATQNPDSVQPFGYCSGAKKLSDVRILWRTIGASEVKLFPYRDKNDHQHLPEGVSNKDFQSGATRKLLLPGVPDQLQQTSFEMSHQEGSTGGLPDLVTESLFSSPEEQSGVAAVTAASSDIEMAATEPSTGDGGDTRDGGFLNDASTENQNTDSESSSEDVEGLFGYPLPRMCPRCGGTNHDQCLLDEDQALEEWISSETSALPRSRWQVLTALRQRQLGSSARFVYEACGARTFVQRFRLQY-LLGSHAGSVSTIHFNQRGTRLASSGDDLRV-WDWVRQKPVLNFESGH-----DINVIQAKFFPNCGDSTLAMCGHDGQ............................................................................................................................................................. 345
19 -11.000[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  9  498.ERCKILISSLQDTL--HGIEAKSYNR---ERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQN............................................................................................................................................................................................................................................................................................................... 696
20 -11.000[S] KOG2827 Uncharacterized conserved protein  ali follow..  11  195LNGRRMASVDEEAKLKRYLEKQARKEQELKEKRKAKLEKLTAGPAKHMFEDQDYLSRREEIINKTEDACEAGFALMLEMKRNSRKSKEQENKNDEDEDDDVNAEDVTDLFNDRGGRKRKIAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQDEKDNGEGTSEAVPEVLVDEQEIEPAKRPRLDSASNIDDLPKIDVKTPCEYGPISLDDFTSAEDLELLGLEHLKSA-----NDRGLKCGGSLVE....................................................................................................................................................................................................................................................... 450
21 -10.600[R] KOG3362 Predicted BBOX Zn-finger protein  ali follow..  5  1.....MKIAQSKLFQGKNRLSSKLFKNSYLNCRRNEANGMQPRSIEVGGRHFSDIKCAFSKLIFLFLSTILISKMFAPSRKPAATANQLRASSRISNLEGNRTLDENARRNRRNRQLDGLEQDNSHDDPHANLVWNKNAPKFDDEMIGGPSAKKAKKVKEDKSGIVHGEKARRRKLARPEFNKQRFKKS.............................................................................................................................................................................................................................................................................................................................. 184
22 -10.600[R] KOG1492 C3H1-type Zn-finger protein  ali follow..  10  368............PVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRR-------KRRWRMVIP----------------FCLI-WVL-------------FGF-----------------TFATLDVTGRVIKFD--------WKRNGKSL........................................................................................................................................................... 655
23 -10.500[S] KOG4610 Uncharacterized conserved protein  ali follow..  10  306LQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS................................................................................................................................................................................................................................................................................................. 523
24 -10.300[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  9  609...TEIVRKNLYRNLFDYGLIAAETVYKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDN.......................................................................................................................................................................................................................................................................................................... 821
25 -10.100[K] KOG2473 RNA polymerase III transcription factor (TF)IIIC subunit  ali follow..  8  352LQLFELDDEYIQQEIRKPPKQTTGLRLRVAVRFVSVFPEPGFEDVFKSIQEEFERSEKTRIQKDALQPSQRNHQETTKDMKKCKNTNKEKDDDVNADEDSEDLDDEYEEAANDDDISISSHGYGDMENNSRTYLQGLFNRFPSSASALYGSANDDNDSDGEYPIYEQESNALDDDEEDDE....................................................................................................................................................................................................................................................................................................................................... 545
26 -9.940[KB] KOG3265 Histone chaperone involved in gene silencing  ali follow..  4  138......FFSGKKHFISKHQLLSNDSPFLIVRTVFVESNKALHLTSNEDDCSGNYKTCINNSSDSFVENLSRKIETEDLRVTTFPIRWTDEDPVAEPVDEEANKVFDEDDLMPLHDDGQDDDEEEEDDDETGPNTEEVDLNESFNERMANAHDGTEQKNGEESMEHDGASGDVEMGDNQLFVQINTDTKATESMVDPLSDTTKRDFRS............................................................................................................................................................................................................................................................................................................ 338
27 -9.680[K] KOG2393 Transcription initiation factor IIF, large subunit (RAP74)  ali follow..  10  167...KQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETN.......................................................................................................................................................................................................................................................................................................... 372
28 -9.620[Z] KOG3756 Pinin (desmosome-associated protein)  ali follow..  6  535..............................VKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRK.......................................................................................................................................................................................................................................................................................................... 713
29 -9.300[T] KOG2381 Phosphatidylinositol 4-kinase  ali follow..  7  8TDPPLLQLEDEVDLIGDFAKDQPPPRNQLSPLLNGFESTSNQLTTKVEINTVGMGKRKTRRRGKKAREPMLLSVDDEDDEEEAQEERNHTNGLPPGEESAGGDAVIQKPQLDNLVMHYDDQIDDEDGEEAVLLKRSSNPRNQRLKGSAEDSIDSSSQQPPIICHIAPAKVASSALTSPLKTTSHTALARHPHDEADDICLVPE................................................................................................................................................................................................................................................................................................................ 210
30 -9.240[S] COG2268 Uncharacterized protein conserved in bacteria  ali follow..  11  148MTMHELGVQNVAEDLSKNGLDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAAFEAERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAE.......................................................................................................................................................................................................................................................................................................... 390
31 -9.200[Z] KOG3809 Microtubule-binding protein MIP-T3  ali follow..  9  22LTEKLLSKPPFRAEMKSDNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLSSDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERK.......................................................................................................................................................................................................................................................................................................... 252
32 -9.140[S] KOG2690 Uncharacterized conserved protein, contains BSD domain  ali follow..  8  226......RVNKLKQAEDLR--------ANLVKRAISLDDEEELSWDIDDEEESSEKVVEATKDVSRLKLEGNDGMGGGDVSETVKDEVESTYSVAKVSTQDEVTSADSVTEVSNVGLKTDKDSEEKKETDSEEVPEEKSFVDAAPPASDEAPIQDSVKPTSDEAPIQDSVKPKSDEAAPSQDSAKPDVAASSSTQQPSEEDLGWDEIED........................................................................................................................................................................................................................................................................................................... 419
33 -9.080[K] KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain  ali follow..  8  7..VPKLSVIEVRNLFAEEGIEEQ-----VLKDLKQLWETKVLQSKATEDFFRNSIQSPLFTLQLPHSLHQTLQSSTASLVIPAGRTLPSFTTAELGTSNSSANFTFPGYPIHVPAGVTLQTVSGHLYKVNVPIMVTETSGRAGILQHPIQQVFQQLGQPSVIQTSVPQLNPWSLQATTEKSQRIETVLQQPAILPSGPVDRK................................................................................................................................................................................................................................................................................................................. 208
34 -9.070[KB] COG5137 Histone chaperone involved in gene silencing  ali follow..  9  80.NIDLLPQLS----------DVLGVTVILLSRVGYYVNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEEESALANASAAEEKPEEKPETSQ.................................................................................................................................................................................................................................................................................................................................. 262
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;