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Query: IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRKLast
1 -80.000[M] COG0796 Glutamate racemase  ali follow..  26  27.TALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHLAIVVIACNTASTVSLPALRERFAFPVVGVV-PAIKPAVRL--TRNGVVGLLATRATVHASYTLDLIARFTDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWEPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQSQDENIAYCMALDEDTDALLPVLQSYGF.... 279
2 -23.500[M] COG1794 Aspartate racemase  ali follow..  13  5..LGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHIADATAVQIKQ---QGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVIDTDREAVNRIIYEELCLGIISETSRDAYRRVIQGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAAD..................................... 227
3 -14.900[E] COG4126 Hydantoin racemase  ali follow..  17  1MLIKLINPNTT--LMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIARKPADAYIIGC--FGDPGLLAAREITASPVLGVAESAMHAATFV----ATSFSIITTLERTRI-ISERLVRSYGMQNHCRSVRATDVPVLELERSSSTADAAILAECEKALIEAQAIVLGCAGMSNLVERLQHRLG--VPVIDGVAAAVKFAEGIVGMGLRTSK........................... 220
4 -10.400[Q] COG3473 Maleate cis-trans isomerase  ali follow..  14  43..IGLI----SNTTMEPEMWMMAPEGVSIHTGRVPLEKVSVEELLKMEEYSAIEAEKLATAGVDLIVYGCTTGSLKIADKLSSASGVQVVTTATAVVEALKALGA---SRIAVATPYIEEVNKREEEFLRHHG-FDIVDFKSLGLLGNLDIGRVPPWRVYRLARSLSIE--GADAIFISCTNLRTVEGLLERDTG--LPVVSSNTASMWMALKTLGIREA.............................. 261
5 -7.820[R] COG2129 Predicted phosphoesterases, related to the Icc protein  ali follow..  9  1MRVLLLSDIHSSTQNLEKILKAAEYDAVFIAGDLTQ--FRPKDAKVVDEIISEQ-------TDSCLAVHGNCDHEAILGEKYKALKFIHGKSVEFDGYTVHGVGGSGITPFNTPSEYTEREILEIMDNFVLRDFNILLSHCPPK--GFLDRTYSGVHAGCEAIRERMI---EFDVILCGHIHESHGVVD------SPQLIVNPGPV............................................ 186
6 -6.950[L] COG0084 Mg-dependent DNase  ali follow..  11  62..VGVSPSEVMAPGWIDTIQKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIP-DQGGVFHSEDAEYARMALDLPVYFSFAGNLTYRNARNLHETVLALPLDRIVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMD............................................................................ 237
7 -6.880[U] KOG3325 Membrane coat complex Retromer, subunit VPS29/PEP11  ali follow..  13  6..........................LVLVLGDL----HIPHRCNSLPA---KFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAG-----------------------DVHIVRGDFDENLNYPEQKVVTVGQFKI----------GLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEH------ENKFYINPGSATGAY........................................ 143
8 -6.760[M] COG0860 N-acetylmuramoyl-L-alanine amidase  ali follow..  12  31....FIDAGHGG-------------------HDPGAVGNGLREKDIALAISLYQKEALEDAGYSVML----SRSTDRFLSLKERTDKAFISN-GRGSEVWCSIYGGVGRSYA-LSSLFYNRGVKTRQGANGDYLHVIRESRMPAV--LVEHGFIDNAGDARILASQQNLRQAAMATVNAIRSV................................................................... 201
9 -6.520[R] COG1712 Predicted dinucleotide-utilizing enzyme  ali follow..  14  2LKIGIVGCGFIGGQICRAIDGGEVSAELYALCDSSESKALELAASLKTCKPSYMKIEELIRGVDLIIESANAVRFIVPQALKAGCDVMIGALADEELRDTLFGLAKEHNCKLYFPSGAVVGIDGLNS........................................................................................................................... 133
10 -6.360[S] COG4884 Uncharacterized protein conserved in bacteria  ali follow..  11  41.PFG--DEGADALNVLENSLRKEPDLDCADFPQMLIETMWGMKYIAMDSILEEDVRAQLLVDEMSTIQSNMITYATAFGQIK------VMGKISHKLKKMGLNALARHQLTAKILQWGDGQDSPILQKMID....................................................................................................................... 163
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.