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Query: IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIACNTASTVSLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQSYGFPKLQKLPILast
1 -98.000[M] COG0796 Glutamate racemase  ali follow..  100  1MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIACNTASTVSLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQSYGFPKLQKLPI 287
2 -22.700[M] COG1794 Aspartate racemase  ali follow..  15  2........................MKILGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISL-KHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKKAQGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAADYALQ.......................................... 231
3 -15.800[E] COG4126 Hydantoin racemase  ali follow..  17  17......................................LMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIARGKPADAYIIGC---GDPGLLAAREITASPVLGVAESAMHAA-TFVATSFSII-TTLERTRIISERLVRSYGMQNHCRSVRATD-VPVLELERSSSTADAAILAECEKAL--IEDRAQAIVLGCAGMSNLVERLQHRLG--VPVIDGVAAAVKFAEGIVG........................................... 213
4 -11.600[Q] COG3473 Maleate cis-trans isomerase  ali follow..  11  16PTYIYRAPLTLTVKCWGSTVMYGWRARIGLI----SNTTMEPEMWMMAPEGVSIHTGRVPLEKVSVEELLKMEEYSAIEAEKLATA-GVDLIVYGCTTGSLIIADKLSSASGVQVVTTATAVVEALKALGASRIAVATPYIEEVNKREEEFLRH--HGFDIVDFKSLGLLGNLDIGRVPPWRVYRLARSLSIE------GADAIFISCTNLRTVEGLLERDTGLPV--VSSNTASMWMALKTL............................................ 256
5 -7.760[R] COG2129 Predicted phosphoesterases, related to the Icc protein  ali follow..  9  3...........................VLLLSDIHSSTQNLEKILKAAEYDAVFIAGDLTQ--FRPKDAKVV--------DEIISEQTDSCLAVHGNCDHEAILGEKYK-------ALKFIHGKSVEFDGYTVHGVGGSGITPFNTPSEYTEREILEIMDNFVLRDFNILLSHCPPKGFLDRTYSGVHAGCEAIRERMIEFDVILCGHIHESHGVVD------SPQLIVNPGPV..................................................... 186
6 -7.480[C] KOG3851 Sulfide:quinone oxidoreductase/flavo-binding protein  ali follow..  11  19THNHAPTAFSTRFLSTSRVNRERQECQVLVVGGGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYGMKRLDQSHRQMADVLPTKAKKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLIPGLVEALETPDSNVCSIYSPKYVDHV---YECLRRTNKGNAIFTFPNCPIVNIIYNTSLPVIFGVKHYAEALMKLIKRRN------------------ITLNVQRNLVEVRHKDNIA................................................... 275
7 -6.620[L] KOG2310 DNA repair exonuclease MRE11  ali follow..  11  1...............MSREDFSDTLRVLVATDCHLG-FKAFEEICSIAEEKQLLLGGDHENKP-----SRTTLVKAIEILRRHCLNDKPVQFQVVSDAFGQVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKK-LGNIRDERLNRMFQTPHAVQWMRPEVQEPRFLDFIVWGHEHECLIDP--QEVSGMGFHITQPGSSVATSLID.............................................. 281
8 -6.590[F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases  ali follow..  12  76YKDKASDQIGLTRAATLVKQARAEVENSVLVDNGIQGSPMGDYMAAK-PVYKAMNPLGYDVGNIGNHEFNYGLEFLKETIN------DAAFPYINANVFDAKTGQHLFTPYVI----KEHSFKDTDGEAHTIKVGYIGKKNLEGKVTAADIKQTAEKLIEMKAKGADVIVAIPHSGISTDEYQAG--AENSVYYLTQVKGIDAIAFGHSHAVFPGKDFANVPGADID............................................................ 310
9 -6.550[F] KOG1800 Ferredoxin/adrenodoxin reductase  ali follow..  15  24...................QSTTPTKRICIVGAGPAGFYAAQLILKQLDNCVVDVV-EKLPVPFGVAPDHPEVKNVINTFTKTAEHPRLRYF---ISLGTDVSLRELRDRYHAVLLTYGADQDRQLELENEQLDNVISARKFVAPGAENLAPDLSGRDVTIVGQGNVAVDVARMLLSPLDALKTTDTTEYALEALSCSQVERVHLVG-LQAAFTIKELREML................................................................. 237
10 -6.400[O] KOG0102 Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily  ali follow..  14  218........NEPTAAALAYGLDKKNDAIVAVFDLG-GGLELNNGVFEVRSTNGDTHLG-------GEDFDVALVRHIVE-LDLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFI-------------TADATGPKHINMEISRAQFEKLVDPLVRR------------------------TIDPCKRALKDANLQTSEINEVILGMTRMPRVVETVKSIFKREPA-VNPDEAVA................................................... 415
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.