Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: IDP02135 putative aspartate racemase [Salmonella typhimurium LT2] STM4510 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240
# Score Template Links and tools%idFirst MKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDTRASLTGEQRLTALast
1 -82.000[M] COG1794 Aspartate racemase  ali follow..  27  1MMKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGDKIGLLGTRYTMEQGFYRGRLEKHGIEVITPDDTDREAVNRIIYEELCLGSETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQD--ASVPVFDTTAIHASAAADYALQ................ 231
2 -24.200[M] COG0796 Glutamate racemase  ali follow..  16  25.RPTALIFSGVGGLSVYQEIRQLLPDLHYIYAFDNVAF-----PYGEKSGEFIVERVLEIVTAV------QQRHPLAIVVIACNTASTVLPALRERFAFPVVGVVPAIKPAVRTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVE--VAETKLHGGVVPLEVLKKILHPWLSMPPDTIVLGCTHFPLLTEELAQVLPTRMVDSGAAIARRTAWLISSQENVISSQDENIA... 258
3 -19.200[E] COG4126 Hydantoin racemase  ali follow..  13  1MLIKL-----INPNTTSAMTELMGDTARTVAAAG-SDIVLATSRSGA---ASIEGHYDEALSILGVIDEIARGKPADAYIIGCFGDP--LLAAREITASPVLGVAESAMHAATFVATSFSII-TTLERTRIISERLVRSYGMQ------RSVRATDVPVLELERSSSTADAAILAECEKALIEDRAQAIVLGCAGMSNLVERLQHRLGVPVIDGVAAFAEGIVGMGLRTSKVGDLAYPLPK... 230
4 -17.300[Q] COG3473 Maleate cis-trans isomerase  ali follow..  13  40.RARIGLI----PSSNTTMEPEMWMMAPEGVSIHTGRVPLEKVS---------VEELLKMEEYSAIEAEKLATAGVDLIVYGCTTGSLIADKLSSASGVQVVTTATAVVEALKAGASRIAVATPYIEEVNKREEEFLRHHGFDIV--------DFKSLGLLGNLDIGRVPPWRVYRLARSLSIEGADAIFISCTNLRTVIGLLERDTGLPVVSSNTASMWMALKTL.................. 256
5 -7.920[C] COG2048 Heterodisulfide reductase, subunit B  ali follow..  12  15IGKKVAYYPGCSLEGAARAYDVSTRIVAKELG---LELDYLEDYNCCGAMETKNVSFWGTMLLNARNMSLARRQGHNVIVAPCNGCSFSLQRVEYFLIPHTYHILEWFYHEAGPEKVKEKTKKPLRGLKVASYEALLEAAGATSVEIEPMHT--------PHSLSDEEVSEKFVMMILQTAKRNGADIIATECPLCHASLEKGVPDVDVPAAYFTQLLGLAF...................... 305
6 -6.930[H] COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase  ali follow..  11  1MKKAILVVGTSYPETREKTIEACEKRVAQEFPEYTVFRAFTSN------IKKLKTRDNMHINTPSQALNQLKELGYKEVFI-----------------QSLHIINGGEFEKITAQVEKFKADFDSIIISQPLLDSKEDYEKAIEAIRHQMPPLKENEALILMGHGSKHHAFSAYACLIERLKQAKIKKAHL----MPFML............................................ 200
7 -6.590[M] COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase  ali follow..  12  15.QALIGIVGGVGLPLMLRYNAIGFDVLGIDIDDVKVDKLNAGQCYIEHIPQAKIAKARASGFEATTDFSRVSECDALILCVPTPL---------NKYREPDMSFVINTTDALKPYLRVGQVVSLESTTYPGTTEEEVQEGGLEREDPGNPNFETRT--IPKVIGGHTPQCLEVGIALYEQAIDRVVPVSSTKAAEMTKLLENIHRAVNIGLVNEMKIVADRM...................... 242
8 -6.150[C] COG0247 Fe-S oxidoreductase  ali follow..  12  461....VGSMGSYDNRS-----QKIAISFAKLLNHAGVSFILGNKEKNSGDTPRRLGNEFLFQELAEKNISEFEKNDVKKIVTIDNLFKNEYPDF--GFEGEVYHHTEVLAELVKNGKLRPQ-LHETITFHDSCYREILKAPGVQLVEMERSRETGM-----GLMWMEEETGNRINVARTEQALAVNPSVISSGCTMLGDGTKAKEAEDQVKTYDVVELLAQSVLGADLKMGEKQ........... 705
9 -6.120[S] COG3581 Uncharacterized protein conserved in bacteria  ali follow..  12  1........GG----CRATNYIGFIRKALKDAGYGNVPVIAISAQKFEKNPGITYGVS-DLLMRVLFKVRPYEKVEGSANKLYEKWVDICKKDSQNKKIKTFKKNVRDIVREFDVKKPKVGLVGEILVKFHPTVVDVIEKEGAEAVMPDEYFRKPMKKALHESKRFEPPKSIKELADGVSDLIEGGTENVIFACPKANIAVDFDPGASEVNQLNRIKLMLSTAFKNLEDTNNIELDAASSEIAAV 333
10 -6.100[E] COG0107 Imidazoleglycerol-phosphate synthase  ali follow..  10  34................................................................VEIARRYDEQGADEITF--DTTLHTVERMASQVFIPLVRSVQDIRNLLNAGADKV-SINTAAVFNPEFVGEAADRFGSQCIVVAIDAKKVSAPGEAPFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNV........................... 202
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.