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Query: IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKKLast
1 -72.100[V] COG2720 Uncharacterized vancomycin resistance protein  ali follow..  17  3..................................................................RFLLPLLLTWPGAALAAQPAPQLALAQDLQLTFK-----GELKKIDDGQLVTAPVTKSWTLPAKWVARSREYNKLSSYLTPYLDRVEKETFVRGRPAKFEQVGNKW-VATDQPEWKLDRPATEAKLLEAIRT-GATTLPVVFSEKVPQRSVALLAEVMRNLASARSSFTGSPDFRVKNIVVGSSKLDYQWVAPGEDFDFNKSMGDINAANGFVPGYIISGGTLALEDGGGICQVSTTIFRALWEAGLPIVERNQHSYRVHYYPVGYEATVYAPSKNLRMKNDTDAYIFIQASWNTQKLRFDVFGPDTGRVLGQQRLLDQPMEGMTSITRTVTFRDGTSQQDSI-KSVYKPWGA 379
2 -6.280[E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases  ali follow..  9................................................................................................IAIECAEATPVISLLEIHKDRQADIKRQTRVLTSP---SVPTKLYHDLHGNGCRRFTAPAGTFRILYDAVIEDSGETDEVNTLAREVPVAELPDEVLFYLLGSRYCE--------------------TDHLSSLAWQLFGHLPSGWARVQAIVDYVHNRL-----SFGYGYARSTRTAAQAHEE-------------RVGVCRDFAHLAITLCRC-MNIPARYFSAWMEVFLDGKFDPRPRTGRIVIARGRDATDVPLLHSFGPHRLCLFKV................................................... 262
3 -5.410[G] KOG3588 Chondroitin synthase 1  ali follow..  502...................................................................................................GSLSFLSNSLKKLVPFQLPGSKSEHKEPKDKKINILIPLSGRFDMFVRFMGNFEKTCLIPNQNVKLVV----LLFNSDSNPDKAKQVELMTDYRIKYPKADMQILPVSGEFSRALALEVGSSQFNNFFCDVDLVFTTEFLQR-----CRANTVLGQIYFPIIFSQYDPKI-AFTQKTGYKGDLVRVGGFDVSIQGWG--LEDVDLFNKVVQAGLKTFRSQEVGVVHVHHPVFCDPNLDPKQYKMCLGSKA------STYGSTQQLAEMWLEKNDPSYSKSSNNNGSVRTA.............................. 802
4 -5.390[Q] COG3882 Predicted enzyme involved in methoxymalonyl-ACP biosynthesis  ali follow..  11  265...........................................DNTLWGGVIVTGIQLSNEFPGNQFKTLQQKLYKQGVLLTIASKNDWRNVKDVHMIITEEMLTQISCHWNPKTDSLRKMAKQLNLGLDSFVFADDHPFERDLMQRELPEVT-VIPFEQDPSQYAFHTFALTEEDRKRSQKYKQLVKHEELKESSTSLDEYLKKLEMILRWSVMKETHVQRVTQLSQR-TNQFNLTTE------RLTEQDVKQTMGESSREVIFTFGLTDRFGDNGLVGYVHIEKSERLWVIRNFVCRVFKRQVESEVLRLLQAKAEGIHTIAGIYRPTVKNQLVSSFYEEHGFRLEGEKWLYNCDQSLPKISWINAQITTEE............................................. 611
5 -5.070[R] KOG0431 Auxilin-like protein and related proteins containing DnaJ domain  ali follow..  16  814...............................................................................................................................................................................................................FNHHAYPGFQRIGVTLDVEIKRWGA-------GKEGNLRALLSTLQ-YVLWPEQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQIAEKVFDML-----------------------KEA---------KFNSE....................................................................... 921
6 -5.070[C] COG1049 Aconitase B  ali follow..  481.......................................HSWLNRLLLPDTVGTGGDPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGKLQPGVTLRDLVNAIPLYAIKQGLLTVAKAGKKNIFSGRILE---GLPDLKVEQAFELTDASAERSAAGCTVKLNKEPIIEYMKSNVVLMKNMIANELLEADKDAEYAAVIEINMDDIKEPIDPDDVCFMSERSGKIDEVFIGSCMTNIGHFRAASKLLEGLWIAPP-----TKMDAKQLSDEGHYGV-LGRAGARMEMPGCSLC-------QAQVREG--------------------ATVMSTSTRNFPNRLGKNTFVYLGSAEL--AAICSKLGKIPTVEEYQANIGIINEQGDKIYRYMNFNEIDSYNEVA........... 856
7 -4.840[C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs  ali follow..  59............................................................................................................................................EIMPLTLKVNGKTEQLEVDTRTTLLDALRENLHLIGTKKGCDHGQCGACTVLVN-------GRRLNACLTLAVMHQGAEITTIEGL----------GSPDNLHPMQAAFIKHDGFYCTSGQICSSVAVLKEIQDGIPSHVTVDLVSPEIRERMSGNICRCGA--YANILAAIEDAAGEIK................................................................................................... 228
8 -4.830[H] COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase  ali follow..  14  4..............................................................................................................................................AKIEDAIEAISRGEMVIVVDDEDRENEGDIIAASDSQQIAFMMNHARGLVCVAMPGERLDALDIPLMVSRNTESLKTAFTVSDYIPGTTTGISAADRAKTVRALVSEGSRPEDFARPGHIFPLRANPEGVLGRTGHTEAAVDLCRLAGKFPSGTICEVANDDGTMARLPQLEIFAER-HGLLVVTIK.......................................................................................... 193
9 -4.810[K] KOG2746 HMG-box transcription factor Capicua and related proteins  ali follow..  20  707....................................................................................................................................................................................................................PLRTWTVCGGSNGGQDGYLLPAVPGESWAVSLLRAPVHTMNGTF----RAFHFSE----NSSYWGYKM-------ECEEGLGGGACGLGGV-----------------HAPLLS--PEGLDSTLIMG--DI-FHCAKKLP................................................................... 815
10 -4.770[O] COG4826 Serine protease inhibitor  ali follow..  11  81.............................................SISASMAICYEGAEDTTKEQISNVFYFPSNKTVLKVRMERINDKINSVNSDYELQTANALWVQEGYPVKETYIHNVQKYYDGEVTNLDFAGKPDASRDTINEWVEARTNDKIKDLVPEDAITADARLIITNAVNGKWMYEFDKEMTGKKSFYPTKEEDISVDMMYTCNRFNYGETSKAKIIIEKFETEFTLNDYTELKNDMEVVEEVK--TTIPKFKFETKTELSNSLIEMGVVDA---FGQADFSGISDSPLEISRVIHQAF----IDVKEEGTEAAAATMEEMAMGVSISWDAKPKEFTADHPFMFFIEDGRTNCIL---FMGKVEYPEYEE........................................ 424

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.