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Query: IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKILSLLVAFVCLWSILLPGQEADAAAKINSWDLVDSSKHLDYSGNSKYMSFIQSGANTWNAYKKGVIRPASGANKSDVYCSDISANNNINATTYSNGKITFNKKNMDKKNNAGKQNVATHELGHGLRLGHNASSDVMYQYSTSKTTLSTNDKQSYDAAYKKYLast
1 -38.800[O] COG5549 Predicted Zn-dependent protease  ali follow..  16  108...............................................YTWQQAIKTAIADWQEF--FPLTIVENTTEADITIFYREPPLPRIVDPETGLRHRMAIAIKPGLAPLSLQGTARHELGHALGIGHSDKEDALYPAQTADVAISPRDLRTLYRLYQQ. 249
2 -24.300[OW] KOG1565 Gelatinase A and related matrix metalloproteases  ali follow..  15  90..................PFNQKTLKYLLLGRWRKKHLTFRIL--PPHTARAALRQAFQDWSNVAPLTFQEVQAGAADIRLSFHGRQSSYCSNTFDGLGSVHFDEDEEGTYRGVNLRIIAAHEVGHALGLGHSRSQALMAPVYEGYRKLHPDDVAGIQALYGK. 257
3 -14.700[S] COG3091 Uncharacterized protein conserved in bacteria  ali follow..  11  7..............................................PIALQQAVMQCLRHYLQLANQHL----GTAYPEPKVNYHQRGTNAGSAYLQSFEIRLNPVLLLENKQPFIDEVVPHELAHLL--PHGKEWRWMMEQVLKVPASRTHQFEVASVRSKTF 127
4 -13.300[R] COG1913 Predicted Zn-dependent proteases  ali follow..  12  1MMGMIIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLARYFLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRKERALKEAMHELGHVFGLEHPNPKCVMHFS----NSIIDTDIKSWM...... 170
5 -12.900[R] KOG4525 Jacalin-like lectin domain-containing protein  ali follow..  19  253......................................................SHSLHSFPSALEYVVPVFSDARRIPSYLANDANESSTIWECANIG-----------------IGAMLHELGHTLGCPHQPDG-IM......................... 319
6 -11.900[W] KOG3658 Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases  ali follow..  14  387..................................................................................QRYNEGSRGWVYRSLNTGIVTLVNYGNRVPARVSQLTLAHEIGHNFGSPHDFPAEIMFASATSGDKPNNGSVKNISAVLAV. 482
7 -11.500[S] COG3824 Uncharacterized protein conserved in bacteria  ali follow..  12  78.............................................SMEEMEFLALEAYAH-KLTGEIVIQIAEFPTDEIMDDLSLETPFDLLGLFEGPNRITLYRRAMLDYWAENVTHVLIHEIGHHFGLSDDDMEKI.......................... 196
8 -11.300[R] COG2321 Predicted metalloprotease  ali follow..  12  74............................................PNEDEAAKFTSVILDTWGQQMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYADGTVYIDLSFYDDMKDKAQGYVIAHEVGHHVGILQQNATQAEVNRLSVRMELQADCFAGV....... 212
9 -11.200[S] COG4412 Uncharacterized protein conserved in bacteria  ali follow..  10  235............................................DNSPRARDLVKEALKQFDVKDPYDLNGDGNLNEPDLMIIHSGMGEEAGGGSIGTDAIDMSAYPYTIMPEDGAAGVFCHEFGHDLGLP---------------------D------EYDT. 363
10 -11.000[R] COG1451 Predicted metal-dependent hydrolase  ali follow..  14  91...............................................NALGLHTAVSRVQGGKLK-------------------------------AKAEIRVA--VFRNAPEPFLRMIVVHELAHLKEKEHNKA............................. 146
11 -10.800[O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family  ali follow..  10  294IFEEMKYLELMIVNDHKTYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLV-AVETWTEKDQIDITTNPVQMLHEISRVTFHYKRSSLSYFGGVCSRTRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRGCIMEETGVSHSRKFSKCSILEY.... 480
12 -10.700[M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis  ali follow..  8  1MTLPDFRLIRLLPLASLVLTACTLPGHKGPGKSPD---------SPQWRQHQQEVRHLNQYQTRGAFAYISDDQKVYARFFWQQTGQDRTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIGLPGDATDYKLDDQYRLSEVNYRQDGKNWKVVYGGY 176
13 -9.830[S] KOG3931 Uncharacterized conserved protein  ali follow..  7  128.........................................FIRFDEKFFQERLGAVSLEWSKAGICYQRGNRFVKQV---------------------TIRLSEPLLKLRPRKDLVETLLHEMIHAY--GNGGHGPNFKRIMETINKVAGTNITVYHTFHD.. 238
14 -9.610[D] KOG4842 Protein involved in sister chromatid separation and/or segregation  ali follow..  10  172............................................AADPGIIAVMNK--HRWRVGIMTELAPVGYVGVSPRCLLGFNKNQGE--------SLRLRTDDLKGFKYQSIKKTLLHELAHMVYTEHDEK-ALDSQLNKEAESLDWTKSRG........ 277
15 -9.600[R] COG4783 Putative Zn-dependent protease, contains TPR repeats  ali follow..  10  1MIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGDFYVRQLTQYINTLGNRLVANANSVRTPFHFYLVNNDQIN-AFAFFGGNVVLHSALFRYTNESELASVLAHEISHVTQ-RHTLAGAQQGIISFTQGNEQEADRIGIQVL.... 210
16 -9.160[R] KOG2719 Metalloprotease  ali follow..  13  160IKGTFLSVILGPPIVAAIIFIVQKGGPYLA----LWAFMFILSLVMMTIYPVLIAPLFNKFTPLPD-KLASSLKFPLKKLFVVDGSTRSSHSNAYMNKRIVLYDTLIQQCKNEDEIVAVIAHELGH---LNHTTYSFIA......................... 307
17 -9.160[R] COG0319 Predicted metal-dependent hydrolase  ali follow..  11  19.............................................SEAEFALWLTRTITPFQAQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFGDLVIEAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQE----GFTDPY... 149
18 -9.070[E] COG1164 Oligoendopeptidase F  ali follow..  16  320...............................................DEAKELVLKGFAPLGESYIDEIKQGYEKRWIDVVENKGKRSGAYSSGAYGTMPYIL----MNWQDNIDNVFTLAHELGHSM---HSFYSRKHQPYPYGDYTIFVAEVAST....... 422
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.