FFAS03 results for IDP90920

Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330
#	Score	Template	Links and tools	%id	First	`MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQK`	Last
1	-112.000	`[J] COG0752 Glycyl-tRNA synthetase, alpha subunit`	`ali follow..`	60	1	`...........................MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGV----KYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRAL--EEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRA`	297
2	-51.100	`[J] COG0013 Alanyl-tRNA synthetase`	`ali follow..`	12	1	`............................MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWIFDGSVVPENPRLTNAQKAIRTNDIENVGKTARMLGNFSIGDYFRKEA-PAEKLYITYYPAVEVGVDPTHLVPIEDNFWEIGAGPSGPDTEIFFD-IEIWNIVLSQFNADPELPQKNIDTGMGLERMVCIIQGGKTNFDTDFLPIIREIEKLSGKTYSPDSE------------------------------------NMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRLRRAVMHGKKLGIQG...............`	324
3	-48.100	`[J] KOG0188 Alanyl-tRNA synthetase`	`ali follow..`	14	1	`............................MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFAFLGTADPNSVRVANTQKCIRANDLDDVGKDVEMLGNWSFGDYFKKEICS----WAWEFLTQRLALPKDRLYVKDNFWEMGETGPCGPCSELHFD-LEIWNLVFIQYNREKQLPKKHIDCGMGFERLVSVIQNKRSNYDTDFVPLFDAIQAGTGAPPYQGRVGAD----------------------------DVDGIDMAYRVLADHARTITIALADGGTPDNTGRGYVLRLRRAVRYATEK-VVDLLGDAFPEVKKDPQH`	369
4	-7.670	`[J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit`	`ali follow..`	14	94	`.................DVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALTMEKYKGKGPIKIICPGKVFRRDDDD-------ATHSHQFMQIEGLYVDHGVRM-VLQAFAKSFFGEERSIRLRPSFFPFTE-----PSVEVDVGWIEILGAGMVHPR----LEMSGFNPGMGVERLSMLKYGIDDIRHF-YTNDRRFLAQFKRV...........................................................................................................`	344
5	-6.580	`[J] COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type)`	`ali follow..`	10	131	`......IFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQ--GEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFENFRFRKDEKRS---------PDTQTEVGWIEIATIYSPTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKM-VYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKH-------------------ASEPSPCSFLAFEGEMMGRNVRVYVVEEEENTKLCNEVVVYKGDIYGIPKTKKWRS.`	452
6	-6.480	`[J] KOG2784 Phenylalanyl-tRNA synthetase, beta subunit`	`ali follow..`	11	331	`.........DTFFVSDPAISTKFPEDYLERVKTVHSKGGYGSAGYNYDWKIEEAQKNVLTTAVSARQLYQLAQEGFRPSKLFSIDRVFRNEDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKKLGITNLRFKPTYNPYTE------------PSMEIFAKWVEIGNSGMFRPE-GLPADVNVAGYGLSLERPTMIKYGINNIRDL..........................................................................................................................`	532
7	-6.060	`[R] KOG2920 Predicted methyltransferase`	`ali follow..`	9	159	`....................................................................................................................................................TGVYEGG--LKIWECTFDLLAYFTKAKVKFAGKKVLDLGCGSGLLGITAFKGGSKEIHFQDYNSMVIDEVTLPNVVANSTLEDEENDVNEPDVKRCRKPKVTQLYKCRFFSGEWSEFCKLVLSSEKLFVKYDLILTSETIYNPDYYSNLHQTFLRLLSKNGRVLLASKA.............`	325
8	-5.650	`[J] COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II)`	`ali follow..`	22	260	`.............................................................................................................................................................FEVYFKGIELAN--FHELDNPAEQTEQPIDVALGIDRLIMLALGEDHIDKVTAFPFPRA..................................................................................................................`	349
9	-5.220	`[O] KOG2918 Carboxymethyl transferase`	`ali follow..`	10	74	`....................................................................................................................................................................VHGVSQLIKAFLRKTECHCQIVNLGAGMDRLKDEDLLPSKYFEVDFPMIVTRIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMN-----TQLPTLLIAECVMTPEQSANLLKWAANSFERAMFINYEQ...............`	230
10	-5.190	`[O] COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases`	`ali follow..`	9	10	`MSGTSLDGVDVVLAAIDERMVAQQASYTHP----LQLKKDILGMCQGQSTTLSAVGKL----------AQLGILFAEAVLALLAKEGLSAQDITAIGCHGQTVWHEP-----LGEPAFTMQLGDNNRIAAMTQIATVGDFRRRDMAYGGQGAPLVPAFHMVLNIGGIANLSVLLPDS----PIRGFDTGPGMDAWIWRNCSLPYDKDACWAPLLEQMFNDPYFRLPAPKSTGREYFNAAWLDKQLARIPGVTAE-DIQATLAELTAVSITEQVRLAGGCDRLLVCGG------GARNPLVMARISALLSGTEVCTTDDAGIR........`	325

FFAS is supported by the NIH grant R01-GM087218-01

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