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Query: IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSIALDRTQTQVYIPESGQTTLENVQKTASTATPSVTVENVKSRDADTLNTGRVKVQLDAPNAAVSDKVTDLTLKAMAQLQKIVDTIAKALHAVADQTGSIAVKIIAGSADDFEVELAAITDKLKSAQNELKIQEVKVAKAKHEQEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVVGAIMVATGVGAAAGALMIAGGVMGAVSMALQEPAVQDALKEAGVNVDVLNKVVMALEIAVAVIGAIVTFGGAAAGGIAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKAIRYGAETVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQELMSIIMQMIQAKSETMQTVLSRPATVLast
1 -82.400[S] COG5613 Uncharacterized conserved protein  ali follow..  32  3.ALITHDRS-----TPVTGSLLPYVETPAPAPLQTQQVAGELKDKN---GGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYV-SVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQ-AAEDGLISQEA-MKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTV 401
2 -5.880[P] KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)  ali follow..  10  67......................................................................................................................ERKVSEYYKQQEKL-LEGFNEMETINETGFVSGAPTEEELKKLAKSERLAVHISNAANLVLFVAKVYASVEVIASTLDS---LLDLLSGFILWFTANAMRTPNNFRYPIGKRRMQPVGIIVFASVMATLGLQVILE----STRLLVSKNGSHMSSTEEKWMIGIMASATVVKFLLMLYCRSFQNEIVRAYAQDHLFDVITNSVGLATAVLAVKFYWWIDPSGAILIALYTISTWARTVLENVHSLIGRSAP--PDFLAKLTFLIWNHHEKIKHI....... 335
3 -5.520[U] KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport  ali follow..  9  403...........................................................................EEIQMLKSNGALSTEEREEEMKQMEVYRSHS-----KFMKNKIGQVKQELSRKDTELKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLK--KDSRLKTLEIALEQKKEECLKMESQLKKAHEAALRASPEMSDRIQHLEREITRYKDESSKAQAEVDRL 733
4 -5.470[C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit  ali follow..  8  1..........................................................................................................................................................MQQKSDNVVSHYVFEAPVRIWHWLTVLC-----AVLMVTG-------------FIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVG------NRYSRELFIVPVWRKSWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSM-DIHSWHRLGMWLIGAF-HVYMALREDIMSDDTVISTMVN..... 219
5 -5.270[S] COG4905 Predicted membrane protein  ali follow..  8  8.........................................................................................................................................................................IVYSFIGWIWETFYCSFGPYCPVYGFGVSA-SLYLNTIVIVTVVEFIGSWILEKFFNMSTLPFNIEGRVAVPVSLFWGVGCIILI----VNPPVQNWIHDFNELTHSWGVILILII---------FLADLVSTFIFTISTKKEVLAMIDDSDKENAAIKEFCLKHLFANHETAANRIKVLELLKNKPLKLKHYNLRRILKNYPNMNLTKKR................... 235
6 -5.180[Z] KOG0980 Actin-binding protein SLA2/Huntingtin-interacting protein Hip1  ali follow..  17  683...............................................................................................................NELEQEMRRMDDAIRRAVQEIE-AIQRRARESSDGIRLEVNESILANCQALMSVIMQ---------VIASREL-----IVAAGKAGGSGLLSAAKAVGVAARVLVE---SADGVVTGKGKFEHL--IVAAQEIAASTAQLFVS---------SRVKADKDSSKLDALSVAAKAVNQNTAQVVAAVKNGQTTLNDEGSL--------------FSYLSLHAAKKEEMESQVKMLELEQSLNQERAKLAALRKQHYHMAQLVAN.......................... 919
7 -5.160[S] COG0217 Uncharacterized conserved protein  ali follow..  11  11............................................................................................................................................................MHRKGRQDAVRSKMFSKLAREITVAAK---------TGLPDPTMNPRLRLAIQNAIERAVKKAAGGDAENYEEVRYEGYGPGGVAV-----IVEALTDNRNRTASNVRSTFTKAGGALGETGSVSFSFDRVGEITYKLSAGDADKVMEAAIEAGADDVETITCGFEDIGEVSKALEGALGEAETVKAVWKPQNTVPVD---EEKAQSLMKLIDNLEDDDDVVYSNFEVSDEVLAKLSA..... 248
8 -5.080[Q] COG3458 Acetyl esterase (deacetylase)  ali follow..  11  4.................................................................................................................FDLPLEELKKYRPERYEEKDFDEFETLAESEKFPLDPVFERMESHLKTVEAYDSGYRGQRIKGWLLVPKL--LPCVVQYIGYNPSMGYICFVMDTRGQGSG--WLKGDTPDYPEGPVDPQYPGFMTRGIL-AVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNF---AARAKIPALFSVGLMDNI-----------PSTVFAAYNYYAGPKEIR.......... 296
9 -5.000[R] KOG1899 LAR transmembrane tyrosine phosphatase-interacting protein liprin  ali follow..  14  8ALEAALEQMDGIIAGTKTGADLSDGTCEPGLASPASYMNPFPVLHLIEDLRLALEMLELPQERAALLSQIPGPTAAYIKEWFEESLSQVNHHSAASNETYQERLARLEGDKESLILQVSVLTDQVE-AQGE-KIRDLEVCLEGHQVKLNAAEEMLQQESRTSLETQKLDLMTEV................................................................................................................................................................................................................................. 181
10 -4.900[U] KOG0860 Synaptobrevin/VAMP-like protein  ali follow..  11  27..........................................................................................................................SRTAELQAEI--DDTVGIMRDNINKVAERGERLTSIEDKADNKRGANRVRKAMWYKDLKMKMCLALVIIIL.............................................................................................................................................................................................................. 103
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.