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Query: CPX_91673_04225 Complex of CD44_HUMAN with IPAB_SHIFL [Undefined organism], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWNPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDSHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIGVXMHNVSTTTTGFPLAKILTSTELGDNTIQAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQTTALast
1 -212.000CPX_91673_04225 Complex of CD44_HUMAN with IPAB_SHIFL [Undefined organism]  ali  100  1MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWNPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDSHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIGVXMHNVSTTTTGFPLAKILTSTELGDNTIQAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQTTA 1323
2 -53.300IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri]  ali follow..  100  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MHNVSTTTTGFPLAKILTSTELGDNTIQAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQTTA 580
3 -50.000IDP91673 CD44_HUMAN [Homo sapiens]  ali follow..  100  1MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQETWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWNPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDSHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIGV..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 742
4 -14.800CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  22  923.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTG---LTLFNNQITDIDPLKNLTNLNRLELSS--NTIISALSGLTSSFGNQVTDLK---ANLTTLENKVSDISVKLTNLESLIATNNQIS--DITLTNLDELSLNGNQLKDIGTLASLTNLTDLDLA-NNQISNLAPLSGLTGANQISN--SPLAGLTALTNLELNENQLEDISPISNLKN-LTLFNNISDSSLTKLQR----YNNKVSDVSSL------------ANLTNINWLSAGHNQISDLTITQLGL---VTGALIAPATGGSYTEPDINEVSYTFSQPVTTTFSGTVTQPLKAI-VDGKETKEV-------AGNLLT------------EPAKPVKEGVGWFDAQT-----TKW--NFST--DKMPTNAQFSINSYTAT-NDGVTTSQTVD----QGLL--QEPTAPTKEG------TFKGDAKTG--DFATSKMPAKNITLYATQAVDYQGLLKEPKAPTKATFKGWYDEKTDGKK........ 1567
5 -14.200CPX_91717_04326 Complex of VINC_HUMAN with IPAA_SHIFL [Undefined organism]  ali follow..  21 1172..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SQTSLKTPASVSEKENFATSFNQKCLDFLFSSSGKEDVL-----SIYSNSMNAYKSE--------LEFSNVLYSLVHQN-GLNFENEKGLQKIVAQYSEIKD---KLSQ-----SAFGPWSAKNKKL--HQLRQNIEHRLAL----LAQQHTLSLGQKL------LNTEVSSF--IKNNILAEKLSNETVS------------------------SLKDDLVAFDSLRNQRKNTIDSKG------IGKSRDLNTVA-LLRKVLNDILEDIK------DGGPT------GANEKTSQPVIQSPTGNSL----LNP-QRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHT-DGIGSDLLTTSSQERSANNSLSRGHR-PEGV-----TSSNDNSSDTTKS-SASLSHRVASQINKFNSFLSRNGDTYLTRETITNSLSNGTKSGTQERELQEKSKDITKSTTEHRINNKLKDANIRNYVTETNADTIDKAIEKAKEVSSALSKVLSKIDDTSANNNDITKAAKDVTTS 1757
6 -13.900CPX_91686_91680 Complex of A1L467_HUMAN with INLB_LISMO [Undefined organism]  ali follow..  22 1519...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLGLTKLQNLYLSKNHISDLRALAGLKSQECLNKPINHQSNLVVPNTVKNTDGVT-DYEKP-----NVKWHLPEFTNEVSFI------YQPVTIGKAK-ARKEVY-TVSYDV---DGTVIKTK-VEAGTRIT-KGWYTEKN-NDFTLYATTEKAVNLTRYVKYIRGNAGIYKL---------PREDNSLK------QGTLASHRC--------------KALTVDREARNGGKLWYRLKNI------GWTKAENLSLDRYD---MEYDARVRNASGNS-----------------------VWTKPYNTAG-----AKHVNK-LSVYQGK-ILREAKTPITTIG-----------GKVIGWVDTRALNTFYKQSMEK---------TRLTRYVSA---------------NKA---GESYYKVPVADNPVKRG-------------TLAKYKNQKLIVDCQATIE--GQL............................... 1998
7 -13.100IDP05754 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo0627 [Listeria monocytogenes EGD-e]  ali follow..  23  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MLKHNVVMVA-----VALIFQLVPWS---------NI-FA-----------G--------------AE------EN-----QTKTTQ---AQPDDQKVA-DENKTTVTPD---KETT----KNL-VNGK------QLLKSVD----FTNKVTDANGNTKE--------------TYAP--G----DSLKFSVSLIPSYSEA---------DEYTFWIQK-------------FQGDKVTFVN----AIDGGYTLKQSPEALAKYEDEPL----TNAKF--------MFATISTTITTKEDYKAIVIE---VDISNIEVPVTP----------TDNGVLTASKVIDSAWRLDKDTGK-VATSSTNYTPE---------DDLVFYYVYAMNN----SGENAVLEKMIDELPAGFSIITEG--LSTASGSSLQRGWVASADQTNLAPGA-TRYELP............................................... 359
8 -12.600IDP04163 sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar eltor str. N16961] VC1349 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  550..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMED---ELRKAKEAADAMSQAKGDFSHEIRTPMNAILGMAH--TTQRKYVTRINESAKNLLGIINDI------LDFSKMEAGKLNVERIDFNLDD--------VLDNVTAVVSLKAQEKGIEFLMDIDP-QVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLIGIAQDKLDD----LFDAFSQA-DNSITRQYGGTGLGLSISKQLVELMG--GQI----------VHSEEGKGSTFEFSV-DKRVLVVD-------DNDSARHILDSLLTAM-EALSEIQQKPFDMLF----VDWNMPGMNGELLTRVKTGLRGHMKSFLVTAYGREINLDGENSKLALIVKPVN----------PSNLLDAIVTSYGIRPNFAGQVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADF---------DLVLMDMQMPVMDGIATEHIRANPRWHSIVAMTANAMAIDIAGMNDLSKPI...... 1096
9 -12.600IDP91804 putative polyketide synthase PksL (PKS) [Burkholderia pseudomallei MSHR346] ZP_04523236 [Burkholderia pseudomallei MSHR346]  ali follow..  14  701...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RDLPLMQLGLDSVGLLELAEALALR-------------------------CGVALPATFLFQHN-----TPARIVAYFDASRHAPPRAGCDTGGETAGAAAAAARPSSRGCPATEPGAAREPAQAAPFAPDGIIVG-----IACRLPGGLDTPEAFWDALKAGA--------CVVGELPGDRWTWPADIDPGARHLDDIRS----FDAGLFRLSPKEVAMDPQ----QRILLELAWEAIE-RAGHCADAVAGSRTVYVGASGSDYRLLLERAGTGVDAHVATGASM------------AVIANRISYTYDLRGP----SIQVDTA-----------------------------------C-----SSLVALHQAVQALRAGECDQALVG-GVNVICHPG-MLSPQGKTLDDAADGYVREGAVMLMLRRLEQA---VADG---DPIHAVIRGSACGLTGGLTV--RQADLLRAAWAAARVS-ADDIGYLTGTRLGDPIERGLADAFGARDDAAARGIGSVKSNLGAAGLAGVLKTVLAKHLNAQISLART--SSFGSGGANAHVVLEEYPSEAPPRFVLSAHSREQLAEYARRVLAYCER-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQ 1315
10 -12.600IDP91805 putative polyketide synthase PksL (PKS) [Burkholderia pseudomallei MSHR346] GBP346_B0724 [Burkholderia pseudomallei MSHR346]  ali follow..  14  701...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RDLPLMQLGLDSVGLLELAEALALR-------------------------CGVALPATFLFQHN-----TPARIVAYFDASRHAPPRAGCDTGGETAGAAAAAARPSSRGCPATEPGAAREPAQAAPFAPDGIIVG-----IACRLPGGLDTPEAFWDALKAGA--------CVVGELPGDRWTWPADIDPGARHLDDIRS----FDAGLFRLSPKEVAMDPQ----QRILLELAWEAIE-RAGHCADAVAGSRTVYVGASGSDYRLLLERAGTGVDAHVATGASM------------AVIANRISYTYDLRGP----SIQVDTA-----------------------------------C-----SSLVALHQAVQALRAGECDQALVG-GVNVICHPG-MLSPQGKTLDDAADGYVREGAVMLMLRRLEQA---VADG---DPIHAVIRGSACGLTGGLTV--RQADLLRAAWAAARVS-ADDIGYLTGTRLGDPIERGLADAFGARDDAAARGIGSVKSNLGAAGLAGVLKTVLAKHLNAQISLART--SSFGSGGANAHVVLEEYPSEAPPRFVLSAHSREQLAEYARRVLAYCER-RQAMAWRLAFVAASLEEAVRRLRAFAAGAAQ 1315
11 -12.500IDP95090 yersiniabactin biosynthetic protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920249 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  16  51...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LLEGRECSEELLAVGLDAAIIDDPHYVNI---DNADCFDEAESMDPQQRLGAVPHKTGVFASSRMSTYPGREALNVTEVAQVKGLQSLMGNDKDYIATRAAYKNLHGPALSVQT---ACSSSLVAVHLACESLRAGESDMAVAGGV-YRYQPGMIFSPDGHCRPFDASAEGRLRDALLSGDPIISVINRKVGYTASVAGQQAVIEEALMLAAIDDRQVGYIETPLG--DA---EIEALRNQRCALSVKSDTAAGIAGLLKT-VLAVSRGQIPPLLNFHTALKEESPFTIPVSAQAWQDEMRY-AGVSSF----------IGGTNASSAASDSAL-RRLATDYAGALRENAD--ALHARRLDLPFRLAAPLNRETAEALSAWA-QVWLFTGGSH---RTMGQTMYQHSTAFADTLDRSACSEMLTPSLREAMQPAIVAFEIAMAAHWRAEGL--KPDFAIGHSVGVVCGHYTIEQVMPLVCRRGADLAANNGTQHTVFSGRRLSALLEPILDRFQDACAGLHAEPIPIISTLTAIDESTLNQADYWRRHMRQPVRFIQSIQVAHQLGARVFLEMGPDAQLVACGQREYRDYWIASARRNKEASNQALLQLYAAGVAL-ADLLAGDGQRIAAPCYPFDTE.. 887
12 -12.100IDP91527 gene: etpA; EtpA [Escherichia coli ETEC H10407] AAX13509 [Escherichia coli ETEC H10407]  ali follow..  17  2..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NRI--YK----------LKFDKRRNELVVVSE-ITTGVGNAKATGSVEGEK-------------------------------------------SPRRGVRAMALSL--------------LSGMMIMAHPAMSANLPTGGQIVAGSGSIQTPSGNQMN-IHQNSQNMVAN----F-DIGKGNTVQFDQPSSSAVA-------LNRVVG-ESQIMGNL-----------ANGQVFLVNPNGV-LFGEGASVSTS---GFVASTRD-------------IKND--DFMNR-GGQKAGAAIVGELTTNAGGYIVLAAD---VSNSG------IRTPGGKTVSERITQLDNGGLMSVQDVVNALVENR-------VSARDGQVYRGMLMNTVLNVSGVV--EASGMHRQDGNISGTLQADNASGQGGKVVVQGKNILLDK---GSNITATGG---VGGGWQGKDSNRNADKVVMQGGARIDVSA 392
13 -12.100IDP04398 gene: ftsK; putative cell division protein [Yersinia pestis CO92] YPO1376 [Yersinia pestis CO92]  ali follow..  17  818.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDLLSSPPAEEEPVDMFALEQTARLVEARLGDYRVKAE-VVGISPGITR-FELDASRISNSR----DLARSLSAIAVRVVE-----PGKPYVG---LELPNKHRQTVYLREVLDCAKFENPSPLA---IVLGKDIAGQPVVADLAKMPHL----AGTTGSGKSVGVNAMILSILYKATPDDVR-ELSVYEGIPDMKDAEMERRYKLMSLGVRNLAGYNEIVVMVDEFADLMMTVGKKVEELIARLAQKARAA-GIHLVLATQ-VDVITG----------LIKANIPTRI-----AFT----SSKIDSR------TILDQ-GGAESLLGM-MLYMAPNSSIPVRV----GAFVRDQEVHAVVNDWKA-DEELDPLFDQAVNFVLE--RRASISGVQRQF-RIGYNRAARIIEQM----EAQQIVSTP-----GHNGNREVLAPPPH................................................. 1304
14 -12.100IDP06016 putative metalloproteinase TLN4 [Toxoplasma gondii] ADX66727 [Toxoplasma gondii]  ali follow..  19 1453.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NSPKPLNAAGSVGTAGKVEGKSRKVASRVDTPGNERRTYASLFGTQNLRSSRIQSDFSSPIFSLGDDADALSLIQVEARVSTSNSKPKAVLGARRGDGQSPTVASPSGAAPKRPAPPAGPRDKSGEASETTGTEGMEVTEIASDVEGQAEEGFLPLARQITP-AADQNAADAKRI-FTDPV------------EARRSI--LENLEAKLSS--------KSSLFSLSPSSHPSPPLSRSEIRTTISRAEEV--RESAPEAVLIVSPEQPPAGMP-DAEPAAAAVPVSPPGAE---------TGVPLVPESPGS--AAAGRQAAMKAPTE-------EASAATEGDRVGTSAEARTRQLPTAEQQT------------------------QRKALLEARLRRLEMQTIAQRA---QLLKQRLDAMKQYGTRP-----TTIFNTWL-----PHKRGQSVGGGTGASSGAF--VSAV------GRSSTA------------TRTQ-----------AASDL--HGSRRLPSALHQAADPLAFKRTLET--REQGLLQRQAELRTQAFGSTAG----DSTAPNLGNLRL----VENVT--ASGA--------------LGSRDQT---------AIAHQ... 1999
15 -11.900IDP91511 autotransporter adhesin [Vibrio vulnificus CMCP6] VV2_0479 [Vibrio vulnificus CMCP6]  ali follow..  18 1468...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGDFEQGDRGWKSTHGVEASYSGNVYGVNGEGHGARVELDTYTNTSLYQDLTDLTEGEVIAVSFDFAKRAGLSNNEGIEVLWN-SSSGDASAWQQKTLKLTAHAGSNRIEFKGTGHNDGLGYI---LDNVVAKSESSQ---QANAVSEHATQNQASQNALSERAE------ADRQRLEQEKQKQLDAVAGSQSQLEDQQALGNNGQAQRDAVKEESEAVQGLDVLDGQATHSGESGDQWRNDFAGGLLGVQSQLDDAKQLANDKIAAAKQ-AQSDNNSKVKESAKSEAGVAKGEQ------------NRAGAEQDIA-------------EAKAD---AETRKADAVAK----------------SNDAKQAESDAHSA---------ANDA---QSRGDRDTMNAENKANQA---------NDA-TKQNEG----DRPDRE-----GVAGSGL------------GNAHSVEGAGETGSHVTDSQTNADGRFSEGLSEQEQEALEGATNAVNRL-----------QI-----NAGI--GSTITSMTETNSD--SIVVPTTASQDLVEIRISGVNLEGLGE--DSAESLVAARAEKVANLYRWLDTDNDVATD--KYV...... 1996
16 -11.900CPX_91688_91668 Complex of B1AP14_HUMAN with Q914E0_9ENTO [Undefined organism]  ali follow..  20  693...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TVTIAPMCAEYNGLRLAYQQGFPVLNT-PGSNQFMTSDDFQSPSAMPQNLMEIAEVDSVVPVNNIKVNLQSMDAYHIEVNTGNHQGEKIFAFQMQPGLESVFKRTLMGEILN-------------YAHWSGSIKLTFTSAMATGKLLLAYSPPGADVPATRKQAMLGTHMIWDIGLQSSCVLC---IPWISQTHYRLVQQDEYTSAGNVFIGQTALLQGDTETAID---NAIARVADTSNSLTAVETHTSQVEPSDTMQTR-SRSEVENFLSRSACVKDQDNVNRMSWTINAR---RMVQLRRKFELFTYMSVTDFAWQTSTNQNGVYGYNALNNMGKLYARHVNKDTPYQMSSTIRVYFKPKHIRPTNLERSSITYVPDTIRPD---RTNGAFGQQSGAVYVLVSTTTASFEG-SHVLLAAVGIVTMGGEGVVGFADIRDLLDDAMEQGIKDYVEQLGNAFGSGFTNQIESLGQDSILEKSL-KVLVKIISALVLITVTATLALIGCTSSP-LKQKVSQYYGIPMAE----WLKKFTE-----MTNAAIKIQKFI----PEVREKHVFLNRLKQLPLLESQIATIEQSAPSQSD---QEQLFSNVQ---FAHYCRKYAPLYAAEAKRVFS-LEKKMSNYIQFKSKSPGAGKSVATNLIGRSLA 1638
17 -11.900IDP00167 gene: rtxA; RTX toxin RtxA VC1451 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20 1564..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NLKLTAQAGSNRIEFKGTGHNDGLGYILDNVTSESSQQANAIREHATQNPAAQNALSDKERAEADRQRLEQEKQKQLDA--------VAGSQSQLESTDQQALENNGQAQRDAVKEESEAVTALAQGLDVLDGQATHTGESGDQWRNDF--AGGLLDGVQ----------SQLD----DAKQLANDKI-------AAAK-------QTLS------DNNSKVKESV------------------AKSEAGVAQ------------GEQNRAGVEQDIA-------------DAQAD---AEKRKADALAK-----------------------GKDAQQAESDAHHA--VNNA---QSRGDRDVQLAENKANQA---------ADA-AKQNEG---D--RPDRQG-----VTGS-------------GLSGNAHSVEGAGEVNTDSQTNADGRFSEGLTEQEQEALEGATNAVNRL-----------QI-----NAGI---RAKNS-----VSSMTSMFSETNSKSIVVPTKVSPEPER-----QEVTRRDVRISGVNLESLSAVQGSQPTGQLASKSV...... 1975
18 -11.600IDP06092 vacuolating cytotoxin (VacA) paralog [Helicobacter pylori J99] NP_222995 [Helicobacter pylori J99]  ali follow..  19 1482.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PNNSSVLNLKNSQLVFSDQGSLNIANIDLLSDLNGNKNRVYNIIQADMNGNWYERINFFGMRINDGIYDAKNQTYSFTNPLNNALKITESNQLSVTLSNIGSEIFNYQKV-LTSSVKGYYNPNQSYQASGSNNTTKNNNLTSESSVISQTYNAQGNPISNKGYNFSNIK--LGQMALKL-------PEIKKILGNDFSLSSLSN----KGDALNQLTKLITPS---KN--INELIDNANNFNNATKIGQTDTNSAVVFG---------------GLGYQKPCDTDIVC----QKFRGTYLGQLLESISADL-NAKEI--LTGTLGS--SASVT--------FNSQTSLILNQANIVSSQTDGIF------SMLGQ----------EGINKVFNQA------GLA----------NILGEVAGGL------LIVNTLGSDSV------IGGYLNQTLSQLL-------QNNFDNL-----------MNDSG------------LNTAILIRQKLGFWTGLVGGLAG----------LGGIDLQ--NPEKLSMSINDLLSKKGLFNQI............................ 1999
19 -11.400IDP92139 DNA polymerase delta catalytic subunit, putative [Toxoplasma gondii ME49] TGME49_058030 [Toxoplasma gondii ME49]  ali follow..  13  538.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DDEKEMLAKWAEFVRQVDPDFLSGYNCVNFDLNYLITRAATLKVVGFNRLSKLKSLESKIRDSSFSSRALGT--------------------------------------------HEGKDIATEGRIQFDLLELVRRDYKLKSYSL--NFVSFFLKEQKEDVHYNMIGDLFRGCPSSRRRPLRLLKELLFLYNYVE-MSRVTGTPLNFLLTRGQQIK-VTAQLLRKCKELNYVVPVVKRTGGDNSVQYETVLEPRKGFYDKPIATLDFASLYP-----SIMIAHNI-CYSTLVASSAAHTMNNPDDV-------VTTTSPPHKFVKKHIRRGV----MIVEELIAARRKEMAAAKDEMTRQVLNGRQLNSVYGYTGTTTGGQLPCLEVATTITCFGRDMIDFTRREV-VITDSVM-VDFGDFSIAEAMK-----LGEEAAQALSEKFVKPIR-LEFEKNKKRYAGLLYTRSKG----------IETVRRDFSLLVQTMADTVLRKMLID-VEAAKEYTRRKVAELLQNKID-LSLL-------VQTKSL-LPHVELAKKL-RDAGTAPSVGDRVSYVVIQGAKGQAQYERAEDPLYVLETQHYLEGIKKPLCRIFEGVESLFSGSHTMKRTV............. 1158
20 -11.300IDP05690 peptidoglycan linked protein (LPXTG) [Listeria monocytogenes EGD-e] lmo1666 [Listeria monocytogenes EGD-e]  ali follow..  19  5.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FFIGMMTFLL---SLICLTGKAEA-KS----------DISDDISPEISD------------NRFQSAEGKV--LPN-------------------------EV------DMSISDQN---------NGKLS---------IDE---FELTSDGDII------LIG----T-VQGQYIQILNENGQNKIPNDQGII--MRVDRTT----KKVEWARVVN--EDGNYNSQYAAKWFSSYKSITTNSSKGDSGGGST------LIVKSIDA-----NGNFQIAH------KSYVS----VPSRSDLTYAYFMDIQME-----GNTLTMSASARYAAQGKQFIRYTLEPASLSITKN--KVDNKGLMAYNADVNGANQLKMSIRESENNYKEITLFDSVPEILANSSPYIFMEDRGD---YIALVNIASEQVVETKKMTMNSSTTLNSVIYS.................................................... 382
21 -11.300IDP05573 cell surface protein, anchor [Bacillus anthracis str. Sterne] BAS4798 [Bacillus anthracis str. Sterne]  ali follow..  16  3..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KSLKCFNVVTIIALLLSITLP-----SPSAFA-EIH--KKSWDELQGNDVRI--KAEQVNAEIRGEVAEREHVFQTIENTDTPIQELENEITFLSQSMKV------NGEKLPENKVA-VEEKDKGLKIRDL-EKMTVLIKASRTQH---FNKE------YKQKISVQKDQVQIGSMSGIPSEDKVEANADDEADSSKEEVGPSPDSTPKKITEKLKVSVEDTNNPTSAEKQPEKEAAKQSNAEVQAASENASKVQIQVGDKQGFGDPLYST-GDLVQTGNVTL-GLTDNHYTRQSVGGKTNKKA---VDVDNDDTT-------FNSSTGAFPNI-----AGSKVKKAYLFWTAAMGAPSDARIDYRVSKMGNKQYAEVSADSIAGYVAYAD--VTNVIEK-----GISQTVTVA--------NVPQIKFEKGSGYYWGNWNLI-LVYENYKSTAWANISVNKINT................................................ 491
22 -11.000IDP93854 hypothetical protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006005375 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  17 1239......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSQAINYLMNGNEGNTTGFKNGRGGYKIIEPNNNPNGFNINDDGLDKEYQSPETSHDFKANSEQLSKIDKPDIDSERKNAEKALEDTSNNKNSNNHRMNTDNNVSLENNKSAIQHDKTKAENDGARLRQEEERHRKNLHHVKNQLDSTDESA--LAKI-QQVNQEAAELVNDHQAAIQLSESDTSSSVYGDVGFQVRDPFANGILDVDKQVAQARNIANEKLEQTNTDSKRYESHMDEGLAKSESALVE------------GRKNVEKAKVEENTRVSAAKDREAEEEQKINAKTAE-NKAENAIQIQG--AN---------SAVNAA-ENKASAA--AKGVQQKEGDK--KEAGGSGR-QMAYVTSAAAVSDESIT-LAKADNSITGGTN-RNTTSDIINSGKNAI-NQAVVSEPQDTLPIPG-QSTPKY-TKYGRLSSKYLNLGM-KDDKSLSSQTLKIIRYTNYKLAKQHVSKNEILESLQFTCYALSAKYMIAERNYGV--GGGKLQDIAKGSSHKMKISS-NVDKTQKSILSGYYREQF--ESEMIS-----ILKIQHSLRRSYDFSNEIAKRRDK 1826
23 -11.000IDP90955 Hypothetical protein PA14_07500 [Pseudomonas aeruginosa UCBPP-PA14]  ali follow..  18  674.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ERQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSSGQHDSSFYLAMWNQLER----------DGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVFADISTLKPLTGLPNRLL---------------FESRLNHALDEAR-IDLDRFKHIN-----DSPIGDL---LKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKLLN-------------------------AFTAPFQAEGHEFFVSASV---IALFPK--GDDAPTLVKNDAAMYRAKSRGRSRELTYLATELETELRRALERDELQ---GLLVGALVRWYHPLFGEISPERFIPLAECGLILPLGDWVLGHALHAPFGPLSVNLAGAQLGQP----LIERLEQLLEQSGLEPSRLQ------------LEITESFIM-----EEALAVLHG---KRLGVQLA-------------IDDFGTSSLSYLKRL-----DILIDKSFIRG-------LPDDPHDA-----AITRAIIALGRSMQL--------------TVIAEGVETEGQLTHEGCEQIQGFVLSPPLPAELFASKFLKPRQ 1235
24 -10.900CPX_91683_91679 Complex of MYC_HUMAN with Q9DUN1_HHV8 [Undefined organism]  ali follow..  23  560.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CVHARTHLHSGS----------------SLWEILYQHSVRLVGENS---------------DSSEEDHPAFCDVPVT--SEDSG-TRHSASGVQPVDNADSPGSGDEGP----STRHSDSQPPPAD---------ETTVHTDNVEDDLTLLDKESLMYHGQEMDMLMRAMCDEDLFDLLG--IPEDVIATSQPGASGVVTEGSIAAS---AVGAGVE-----DVYLAGAL------EAQNVAGEYVLEISD-EEVD----------GAGLP------------ASRRRPVVGEFLW-DDG--ERPTTRRIRHRKLRSAYYRVARPPV-MITDR-------LGVE---------YFGRPAMSLEVERKVFILCS--QNPLADISHSC-----KGLRVLLPKPDDNNTGPGDVNLLAAVLR--SF--ASGLVIVSLRIYVKNLCKSTVLYHGNNPPKKFGGLSSRAVLD-----NVAQYRIQGHEIKKTTVFIGTSAEQFDMVPLVIKLRLRSVT................... 1003
25 -10.900IDP06002 amine oxidase, flavin-containing domain-containing protein [Toxoplasma gondii ME49] EEA99631 [Toxoplasma gondii ME49]  ali follow..  23  515.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GASEEEASSLNGRKAGTVETVSL-------EPDDGRTREKKRRNR---------------ASSAFPAYYPLGEALLRSSPGLEGDDAADPAPERPSPRVSLGVSKS------------PPASRQGGRFASACCTV---------------CCTGQCRKRRVRRQPQDRGEEEFERTYHAESGTLEGVQR--EKRSGRRKHASSLWRDREENNGS----------ETGEKSDAG--------KRDA----RGPCSPGQMSIDQQ--DREHGFSSPSDTRDALSNASHVQSLFT-RRNLSGDTSASK---------GGHENFSSPSSLPSSSSLPSSS-----------VPSLRLHEH-------------------SVVRPVFP-------VAV-----CTDSGCRRSAWD-VLEECVREVLEEECLPV-----SPFPQ--EG-GVLSSACKPLGS--GSPSG--------------GWEATRRVPQ----------THCGPR--RQSPTREED----AAGR-SKFTLTEGE-----------------LSAAVSASTEKGRRAPSCRSSNACA-------LSEQEMRMLFVQLQSRLGYVGDLREQSVSALRNFPFEVAVLNSHGQARLQAT.. 987
26 -10.700IDP00192 putative virulence determinant YPO0947 [Yersinia pestis CO92]  ali follow..  15  4.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNEMAGFYIDKLSL-----SQRLSIVSETYDRVNK--KEKLKYSYDDIEMIKKVKYIDAQLYSLIREGLSVPATLTQ-----EEKIKITDLAIDAALFND----ERIYISSLGISVTPPLPQEE---GSRLYIYHAYMDVWRGDLLLGSGTELSDIQSIT--LRFMIDM-----AESLKLN--------------IINPAD------------KAMVDLINHLRYEMISYASSFCATYSGGTVYLSSPDGLRI-----------NNYFWNSEL-PVLRAL-KGLIRILHDELGDLLTAKDISMTQEKLLVDIYEFQPSLLAVRKEIINTIDIDRHAPE--------------VELLRYFLRKIHEQLDEITEKVLKEAER--LAVGSEIIKKSIIPLDFNSDVI---PFNLLRESWDVIISDRSLVEGTLTIHFSVGRKIMVDANRNQLKQ----MATLERFL------LANFTPRNTPQDLKIIDNV.. 507
27 -10.600IDP90302 sensory transduction histidine kinase, putative [Borrelia burgdorferi B31] BB_0420 [Borrelia burgdorferi B31]  ali follow..  15  740.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SFEQKRRYSFVMNEKKIAEAANAAKTIFIANVSHDIRTPINGIMA--ATELLDTTILTDVQKDYV---RMINYSSD-SLLSLIDDILYLSKIDVNELYESQEID--LESEMEMVLKASQCAKKNIDLFSYSKSIFNNYIVKIKQVLINLI-----GNAFKFTDDGVIVLNYEEVCRTRTDG--NRVLVTVEFKVIDTGKGIEKE---FEIFKQ---EDDSSSRVHEGAGLGELIRLMTTF-KLSINRFQSVNGDNKVLNVLLSQKSIKIFEHCSLGCSSNVRYVASFEDAYKVFKKYPSYNFVYINVNNDNIQEGIRLANNIERLNSDVQIIFLFYYLDNKALKNLKYGYVKKPLMG--LGICSILYKKEFNPEMDFEDLVPIDSALRIKEPINVLIANFIDVVDDGVKALKSLKDKKYTIS---FIDIMPR-YDGFSVALVAVTAHALQE-DKCLASGMNDYISKPIHISSIKTILLCRGLVDFISINIIDLEKAFDEEGALSNMSELYKDFQKIETSKDSISELKKMYSFVKDDLFQLISDIKENILFESEIVSE....... 1413
28 -10.600IDP06368 gene: ORF64; ORF64 [Human herpesvirus 8] YP_001129421 [Human herpesvirus 8]  ali follow..  14  239......................................................................................................................................................................................................................................................................................................SITEITSPSVSPAPSEAPLRRDSTQSQDETRPRRPRVVIPPYDPTDRPRPPHQDRPPEQAAGYGGNKGRGGNKGRGGKTGRGGNEGRGGHQPPDEHQPPHITAEHMDQSDGQGADGDMDSTPANGETSVTETPGPEPNPPARPDREPPPTPPATPGATALLSDLTATRGQKRKFSSLKESYPIDSPPSDDDDVSQPSQQTAPDTEDIWIDDPLTPLYPLTDTPSFDITADVTPDNTHPEKAADGDFTNKTTSTDADRYASASQESLGTLVSPYDFTNLDTLLAELGRLGTAQPIPVIVDRLTSRPFREASALQAMDRILTHVVLEYGLVSGYSTAAPSKCTHVLQF-LWGEKLGIPTEDAKTLLESALEIPAMCEIVQQGRL-SKLNPCLESLHATSRKSLIQAFNAEGIRIASMAELIETITARLKPNFNIVCARQDAQTIQDGVGVNKRNAQIAQEAAYFENIITALSTF-QPPPQSQQTFEVLPDLKLRTLVEHLTLVEAQVTTQTVESLQATAEHHLTNVPNVHSILISNTLKVIDYQQFSYLGGELASWPHAPAAEALTRQENKNAVDQILTDAEGLLKNISERFSRLKTAIQNLVSSESFITNLVTNVPKLGETSPSVRQSLSTLCTTLLRDALDALEKLLGEGTTLALETLLGYGSVQDYKETVQISSLVGIQKLVRDQGADKWATAVTRLTDLKSTLAT---TAIETATKRKLYRLRDLKEAQKHETNRAMEEWALDNASPERVATLL-----------------QAPTAKAREFAEKHFKILLVPADAPVQASPTPMEYSASPLPDPKDIDRATSIHGEQAWKKIQQAF--DFNFAVLRPADWDALAAEY-------LPAAVG-PALSGFLETILGTLNDIYMDKLRSFLQPFQAPPFDWLTPYQDQVSFFLRTIGDKILSHALQSGDLQQATVGTPLELPATEYAR-IASSVFNDQVRSEVADIQAPKTVADGLPAFLKTSLQQEAKLLALQRADFESLESDMRAAEAQRKASREETQ. 1425
29 -10.400IDP91981 serine protease [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000172 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KKSTVLSLTTAAVILAAYAPNEVVLADTSNSEDALNISDKEKVVLDKETENKEKHEDIHNAIETSQDFKEKKTAVIEGKAVVSKNPVTDNNTSNEEARIKEDSNQSQGDHTDSFVNKNTENPKKED----KVVYIAEFKDKESGEKAIKQLSNLKNTKVLYTYDRIFNGSAIETTPDNLDKIKQIEGITSVERAQK-PMMNHARKEIGVEEAIDYLKSINAVISNIDT----TDYRHKAMRIDDDAKASMRFKKEKGTDKNYWLSDKIPHAFNYYNGGKITVEKYDDG-MHIAGILAGEQDIKNFNGIDGIAPNAQIFS--YKMYSDAGSGFAGDE-TMFHAIEDSIKHNVD---------------VSVSSGFTGTIRALRKAGIPMVVATGNYATS--TGNVTRTAAHEDAIAVASAKNQTVEFDKVNIGGESFK---TKAPSKLKFVYIGKGQDQDLIGL-------LRGKIAVMDRIYTKDLKNAFKKAMDKGARAIMVGVKLWNMINP-MESFNSN--ELYKEDIIVPAGS-GPRIDLLLKPDV------------------SAPGKNIKSTLYGYMSGTSMA-------IVAASTVLIRPKLKEMLE-----RPVLKNLKGDKIDLTSLTKIALQNTA. 743
30 -10.200IDP90573 gene: rpoC; DNA-directed RNA polymerase beta` chain [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0479 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  73...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGKYKKMRFKGGVEVANSKVRRSRMGHIELVTPVAHI---ERVLYYEAYIVENPGDAFYDNESTKKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGATNSEAKKKTIIKRLKVVENFLNSNLNANTDS-MITNL----------PVLPPDLRPLVALDGGKFAVSDVNDLYRRV--INRN--TRLKKLMELDAPEIIIRNEKRMLQEAVDAL-RANAVKGANKR-----PLK---SLSEI--IKGKQGRFRQNL------LGKRVD-FSGRSVIVVGPKLRMDQ---CGLPKKMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNECLEEVKGHPVMLNRAPTLHKIQAFHPVLVGKAIQLHPLVCAAFNAGDQMAVAECKVLMLSSMNILLPASG----------------KSVTVPSQD----MVLGIYYLSLEKAGA-VLKKKDIAALV-----YVYKQGGLEITASFLDRLKNLIS--IADIIVKAIDEAKKQVREIQNSYKEGFNSIYGARGSAAQISQLAAMRGLMTKIIETPIISNFREGLNVLEYFISTGARKGLADTALAGYLTRKLIDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLA 843
31 -10.000IDP04495 sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar eltor str. N16961] VC0622 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  289.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IQQGYLHSYAMFRLPSNAITKLIAEGSSNPSMQTILVGQDHRSRTLTSAEIAVEKSKAVVDLALSGK---RAVGTYTNTDGEQIIAAYAPINLKNIHWALVVELPEKEAFARVRQLEKLFVFAMLTAIVLVVIASHY-LSNFITSPLLKLTWAAERVS--AGDLDEAMINTERKD----EIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHE-LRTPLHGMIGIAPISAAHKYQLDIIISSGQRTLVDDLLDYHKM-RYGALDIQRCAVDLSSATRLVEQPVWVSADPQRLEQVLYNLIG--AIKYTSEGKIVISA--VRVQVVD------TGQGIPAEQLEHIFEPLIQ-----AGHDASRYRQGAGLGLSISRQLIELMHG---------TLYVSSQPMV--------------GTTFSFTLPLLL------ADDEPVNLRV-LDSFLRLEGYRVHT-EAIKREKPELVLL--DIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDANDYLSKPFNK----QELAARIVAHLTASKAELRRIENAQLQKELK 907
32 -9.870IDP02181 two-component sensor/regulator [Yersinia pestis CO92] YPO0256 [Yersinia pestis CO92]  ali follow..  16  282......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YPRMGFAWEALKPALYQLPFALAILLLLTSVLSLLLRY----------------YLAIPLWNFINIIGATGPAMEPRLPI--NRIDELGHIARAYNNLLDTLNE---YDTLEMKVKERTLALAEAKRAA-------EQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRL--AETAHQCSLSLLAII---------NNLLDFSRI-ESGQMTLSLEKTALLPLLDQAMLTLELELDTLRLRQILVNLLG--AVKFTGRIQLRVRRQNLCFTVED------TGCGIDVQHQQTIFQPFMQ-LGLAIADNLAKMMGGLTVFSEPGQ--GSCF-QPWQMHILLVHQVTRADSGTTALAIGRQHRFDLVGLATTARWRHDPANIDSHCMITALSANA--IKTSQAGMNHYLSKPVTLGQLAEM--LDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHA.. 895
33 -9.730IDP06036 SNF2 family N-terminal domain-containing protein [Toxoplasma gondii ME49] XP_002371474 [Toxoplasma gondii ME49]  ali follow..  12 1083.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSADDSRDDLSRREQSEREGNRQLRWPSLSDAEP--RSPAGARVQNMKREEGDSKRVLAVKPSKAEVVCVCSPHSAGAVANKSTEEENLTGFSSALSQGPHGEGRGGQSSEKTKSASDTEPSPQPRYLSSNPAPALVRATLQSEGVQWLFAL--------------------HDKGLNGILADEMGL-----KTLQTIRGV-SVMLNWEREFFKFCPGFKVL---SAQERAKKRTHVCIA---STVVKDAQIFRR--KKWYSLVLDEAQNI-KNFHSWQTLLTFNTQHRL------LTG----TPLQNNLAEL-------SLMHFLTVFQSHDDFKEDPLTAAIEQEQVSLEKLHALRRLKKDVEKQMPR--KYEHVVRCSLTKRQKCLYDEF-----MQRRQVQQTMAAGNYRGMMNILMQ-----LRKVCNHPD--LFEPRPIETPVGGGGVNALSYDIPAMIC-------------LWLHEPWNWCIE--ERFRRVTLPIISLLFSSLQHGLAQNLSPLRLLAPASSSSL-FSPFDLLSAATLLSL------PQPVYT----------RRLHASR-NSSASGLPSCSSSVAAGVTRFPALSPHVPVENQGNALPLSLPLQEDERIQEFIL. 1689
34 -9.190IDP92557 membrane protein [Francisella novicida U112] FTN_0757 [Francisella tularensis subsp. novicida U112]  ali follow..  16  306............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ASGGRHRSQYFQEITNDENNHQEGYLKNFCENLHN-LSVKNLVNLIGNL----SNLELKPLRKY-FNDK------DEQKFTETYVKDQDKKDGAKYSYKDLCNELKQKVTKLLELDP-------------CRTIPPYLDNNNRKPPKCQSLILNPKFLDNQLQELKKLQSIQNYDQPYFVEYKSSNQQIASGQRDYKDLDARILQFI-KASDELLLNEIYFQKKLKQKASSELE--------KLESSKKLDEVI--LSQILKSQHTNGIFEQGTF----------LHLVCKYYKQRQRARDSRLYIMPEYRYDKKLHKYNNTGRFDD--NQLLTYCNHKPRQKRDLAGVLQVGSDDDLFISKWLVEHIRGFKKACEDSLKIQKDNRGLLNHKI-NIARNTKGKCEKEIFNLICKIEGSEDKKGNHGLAYELGVLLFGEPIKKFNSIYSFAQIQ-QIAFAERKGNANTNA-DNKDKIILSAKAQRLPAIPTRIVGAVKKMATILAKNIVDDESNAFEFEPAL...... 908
35 -9.090IDP04533 gene: rpoC; DNA-directed RNA polymerase subunit beta` [Salmonella typhimurium LT2] STM4154_1_1407 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  183..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP------PLDGGRFATSDLNDLYRRVNNRLKRLDLAAPNEKRMLQEAVDALLDNGRRGRAITGSNKRPLSLADMIKGKQGRFRKRVD-YSGRSVITVGPYLRLHQ---CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEADILDEIREHPVLLNRAPTLHRIQAFEPVLIGKAIQLHPLVCAAYNAGDQMAVLEARALMMSTNNILSPANG----------------EPIIVPSQD----VVLGLYYMTRDCVNA-ALGKKAISKML-----TCYRILGLKPTVIFADQTMYTVGDRVSKAMMDNLQTETVINRDGQEEQQVSFNSIYGARGSAAQIRQLAGMRGLMAKIIETPITANFREGLNVLQYFISTGARKGLADTALKTAN----SGYLTR------RLVDVAQDLVVTEDDCGTHEGILMTPVIE.... 827

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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35