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Query: CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMKXMANEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARAQGKGMVRHKSEDLQSFLEKYPPDFRKPKRDLSATWDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKANERNIVKDLKRLENKINVIICLVVVILAVLLLVTVLSILHIGMKSLast
1 -253.000CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali  100  1MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMKXMANEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARAQGKGMVRHKSEDLQSFLEKYPPDFRKPKRDLSATWDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKANERNIVKDLKRLENKINVIICLVVVILAVLLLVTVLSILHIGMKS 876
2 -145.000IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  100  1MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK................................................................................................................................................................................................................................................................. 619
3 -54.400IDP91752 TIP_SHV2C [Herpesvirus saimiri (strain 488)]  ali follow..  54  3.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARA-QGKGMVRHKSEDLQSFLEKYPPDFRKPKRDLSATWDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKANERNIVKDLKRLENKINVIICLVVVILAVLLLVTVLSILHIGMKS 256
4 -13.100IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  10  1...................................................................................................................................................................................................................MKKALKLFLATICMFIMIYPSTA-VNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEA----GNLVTLSLNNTNIQTLEPIKNQT--SLTYLTVGGDNVKDSLFVDLNGLVNLQSL-----SINGSEVTHNVFKTFNKLPKL----------------------TYLYAQNSMKITDISALASLPALTTLFLQFDGIDD--------FRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPS--------------------------SRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGD----TALPIAGVMLSLAALLIFR--SKS 605
5 -12.600IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  20  103..................................................................................................................................................................VDDVVTEVELNRMWYLTSVATIGSIE--------------------IQYLPNLYDVRLQFDKQCKDLSPFLKAPNGYSQLYRLNINNGNI-SDISPLTELSAPTLNDIDLGGNNISDLSLFPKLPNKFPNLEEISLERNNISDVSPLAKFASTKIKIFNLDENHITDLSSLTNNKMPNLQRLYVRYQTLDMEPV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 276
6 -11.800IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  45.............................................................................................................................................................................................................................................IPDSTFKAYLNGLLGQASTANITEAQMDSLTYITLANINVTDLTGIEYAH----NIKDLTINNIHATNYNQISGLS--NLERLRIMGADVTSDKIPN-------LSGLTNLTLLD----------------------------------------------SAHDDSILTKINTLPKVTSIDLSYNGAITDIMPL-------KTMPELKSLNIQFDGVH------YRGIEDFPKLNT--SQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQNGGSYTISMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQKALPVQVMVIVEKETPIPDPTPTPTPDPTPTPDPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSL-----------------VAGATVGFLLIGLSWFVSR..... 596
7 -11.200IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  12  27.............................................................................................................................................................................................................................SAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTISNASLTDLTGLDYA----HNLTILHLTNTGVTDYSLVANIP--SLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTKFNKLPN----------------------------TFLNLDNNPSITDFMPLKSLPNLASLFIQFCGVND--------FRGIDSFPKLTNLAAFGQNV--GSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFPFTTNTASSSTYFTLNGVQI--SGSRLSIDDTGVTVSGITKDFFDS-----------ITKMEYNAFYDNPAGSYNSPPNFN-------------SYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADP-------------VIILVNVVA-GNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSE-VNIALPNTGD-----------ATTVLIGIILAGVAILFFRKRKHS 589
8 -11.100IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  14  6..................................................................................................................................................................TSVLHVLLVVTAILGISLWVNASHGMKAQAESIAQPAPINEIFT--DPALADEVKTELG-KTSVTDEVTQTDLNQITKLEA-----DDKGINSIEGI--QYLTNLNMLGVSSNQITNITPLANL----TNLDSLYLGDNKISDVTPLSGLT--QLTFVQLSINQIKD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 156
9 -10.800IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  18  65.........................................................................................................................................................................................................ADITEAQMATFRNI-----TLNSGIKDLTGIEYLKNITTLSINNINASYEPIQTLSSLEKSVLSNLTFLDLSRTNIDDFSKISNI----PNLNKLDISNNKITKISELNNLP--SLQELRVSDCQITN----------KGIEKFPNLTAFY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 214
10 -10.500IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  11  118...................................................................................................................................................................................................................................TYNSLFPDDNLAKK-LAVIITGNAAATGNESVDSAALLAISQLDLSGETGNDPTDISNIEQYLENLTSLNLSENNISDLAPLKDLV--NLVSLNLSSNRTLVNLSGVED--------LVNLQELNNKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFLQENDLTNLTSLAKLPKLKNLYIKGNASLKSLETLN-------GATKLQLIDASNCTDLETLGDILSELEMIQLSGCSKLKEITSLKNLPNLVNITADSCAIEDLGT-----LNNLPKLQTLVLSDNENLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEITDLP-RLSYLDVSVNNLTTIGDLKKLPLLESSNRL--------SDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMLRKVDASNNLITNIGTFDNLPKLQSL-DVHSNRITSTSVIHDLPETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLESDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLR-RLIYLNLDSNKIEDISALSNLTNLQELTLENNKI-------ISALSDLENLNKLVVSKNK 762
11 -10.200IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  14  96...................................................................................................................................................................................................................................TYAELFPDVNLAKI-IAKNISGTEDINAEVSE--AELQTITNLVATNQNITSLTGIEHL----TALENINVNNNELTTIDSLFNIP--TLKSISANNNKITGNFSLVKT--------LPELHTLE---------------------------------------GNAITELDIENQPNLVTLSDELELKKLTLKNLSQLNGLGRIASSISIDMNLPEIISVDISGNYLDSDDIHLENLVKNLDISSNELTRL............................................................................................................................................................................................................................................................................................................................................................................................................. 305
12 -10.100IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  14  86..................................................................................................................................................................ITTIEGLQYLTNLSELELIDNQVTLNPLTNLTKITELRLSGNPLKDVSALAGLLKTMDLIYTDITDVTPLAGLSNLQV--LNLDINQITDITPLAGL-----SNLQFLSFGSTQVSDLTPLANL----SKLTTLNAMNSKVSDVSPLTGLS--NLTEVYLEENQISD----------SPLAKLPNLSIVT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 256
13 -9.680IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  24  139.........................................................................................................................................................................................................RNLSLPNYQNYPEMDTITMSGNNLIGSIPDFTGMPALKQLYMSEMLITSDELPNFNNI-----PLLITLDLSSNQLTTIPDFQNI----PNLTFLDLNANLLTNTPDFQNLP--KLTDLNLRHNNLTGTMVNYTN--------LPSLESLN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 270
14 -9.640IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  14  36............................................................................................................................................................................................................DPVLNSGLKNIIGNPFLDEITEANMATITV-ADLSNMSGAPGYPVTGLIKDLTGL--DKAVNMTKLYFSNSQIKNLDKIKNL----PNLKKIVAVTTGLNNISALGEMP--ALEEVELGGDYITD------------FTPLLEKENLTSFSYNSYAWSNPAYHQINNDEFKNFTKLKSLVKL-----------LTWNNITDLSPLTENDHITNLNLN-----------------YNQFTNVAPIAKNLKVLYLNNNNLIDALNTLRGLT................................................................................................................................................................................................................................................................................................................................................................................................................... 261
15 -9.540IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  11  44..................................................................................................................................................................INVIFPDPALANAIKIAAGKSN--VTDTVTQADLDGITTLSAFGTGVTTIEGVLIGLELKDNQITDLTPLKNLTKITE--LELSGNPLKNVSAIAGL-----QSIKTLDLTSTQITDVTPLAGL----SNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSD------------LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVK....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 282
16 -9.340IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  16  36............................................................................................................................................................................................................ELDGNEPFIAETEKILSKNRQDITLADLETIQKIHVFGA-----------DSIPNKISDYKNLTALEANYGTITEVP---ESVGSLKELVTLNVDENNLQEFMVIFQLP--KLEVLYISRGNI-------TEIPTEITTLASHLKVLD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 161
17 -9.160IDP92569 gene: TI; trypsin inhibitor [Toxoplasma gondii] AAG02569 [Toxoplasma gondii]  ali follow..  13  238..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AMLWSQEAARWHMLELIEEMKKNSKLSVLRTEELAEKVSQFRCNLSGDSRSFVSVARV-MLIT----LYIPLE. 325
18 -9.070IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  22  66..................................................................................................................................................................VTDAVTQNELNSIDQIIANNSDIKVQGIQYLPNVTKLFLNGNKLTDIKPLANLLGWLFLDENKVKDLSSLKDLKKLKS--LSLEHNGISDINGLVHL-----PQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISDIVPLAGLT--KLQNLYLSKNHISD----------RALAGLKNLDVLE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 236
19 -9.050IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  14  70..................................................................................................................................................................TSDTVTQTELNSLTGSFQAINK-GIKSIEGVEYLQNITELDVEKNQITDIAPVLTTLLINTNQITDISPVADLANLTT--FYCGNNPISDISAVQNL-----TKLSIFNCYTANVEDISPVKNL----VNLKTLSLGSNNIHDISDIEKLT--ALEYLSFSNNPVEN------------PEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNIVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 311

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.