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Query: IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFLNTNEILDYSALKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVTPLVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITNVAPLSALKNVTYLTLAGNQIEDIKPLYSLPLTDLVLTRNKVKDLSGIEQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGKISTKIRLKGEGGTYSNDAVKWSTPGEKVYEFGVKDPFADTGIFFTGSVIQNVVESKADNTSKEDNTSKEDAKVEVVEFKDVPKGHWSEEAIHYLAKENIFKGYGNGQFGFGDSITRGQVASLVQRYLKLENKVEQKERFTDTKGHMFEQDIATVAQAGIMQGDGTGEFRPDGVLTRYEMSVVLYKVFQLKEDGNNKVNFKDVPTGHWAEGYVKALVDNNISKGDGKERFLGDDFVTREQYAQFLYNAITKLast
1 -84.500IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali  100  1MFLNTNEILDYSALKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVTPLVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITNVAPLSALKNVTYLTLAGNQIEDIKPLYSLPLTDLVLTRNKVKDLSGIEQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGKISTKIRLKGEGGTYSNDAVKWSTPGEKVYEFGVKDPFADTGIFFTGSVIQNVVESKADNTSKEDNTSKEDAKVEVVEFKDVPKGHWSEEAIHYLAKENIFKGYGNGQFGFGDSITRGQVASLVQRYLKLENKVEQKERFTDTKGHMFEQDIATVAQAGIMQGDGTGEFRPDGVLTRYEMSVVLYKVFQLKEDGNNKVNFKDVPTGHWAEGYVKALVDNNISKGDGKERFLGDDFVTREQYAQFLYNAITK 542
2 -57.800IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  17  231ITIQGSDVRNIAPISQLKRLKVVDLSFNKIENVEPLVNLEKLDILELQNNRIADVTPLSQLKKVRTINLSGNKISDIKPLYNVSSLRKLYVSNNKITDFTGIEQLNKLGTLGVGSNGLVNIEPISQMSGIVELNLEKNDIKDITSLSKLGLQSLNLEENYVSDVSSLSNLINLYELKLATNEIRDIRPIQELGKRIKIDAQRQKVFLDAYMNEEVKIPVYDVNGTALQNIEWLLTVKALKITDGKKEGITDFSGLEFMTNVEELTLQNVNMKNAEFISSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFKMQKLKTLDLSNNKLDNAALDGIHQLENLDALLVNNNEINNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNK----IQDISTLSSMLDLLSLKLAGNEIRDVRPVIQLAQWITVDIKNQKI---------------VLEDGQMNQEIQIPIYDLEGEIFEDIEL.............................................. 790
3 -55.400IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  16  13TLAVVLAITFWVGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKDVSALAGLKNLKTMDLIYTDITDVTPLAGLNLQVLNLDINQITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVY--AVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTENEEPNASSPINVENDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITG............................................................................................ 470
4 -55.300IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  19  36ATITQDTINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT.......................................................................................................................................... 438
5 -54.400IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  12  11LLLSFACVFSIGDFTKPHTVEAEIVNPKPVNEIFTDPKLAQVVADWLKLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPIKNLNMLELNVSANPISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPLKNLTNLTRLELENQTR-ALDAVEIDNPLILPAPVIDENGSRVQPSKVS--HAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPVVDPVDPVDPVNPVDPVNPVNPDPVNPMKPVEPIIPVTLE............................................................................................ 482
6 -53.500IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  18  187LNLSENNISDLAPLKDLVNLVSLNLSSNRTVNLSGVEDLVNLQELNVSANKAEDISQVASLPVLKEISAQGCNIKTLEAGAVLPELETFYLQENDLTNLTSLAKLPKLKNLYIKGNASKEITSLKNLPNLVNITADSCAIEDLGTLNNLKLQTLVLSDNELTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEITDLPRLSYLDVSVNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFD--NLPKLQSLDVHSNRITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRS--LGTMDGVPKLRILDLQNNYLNYTSSLSDLTNLTELNLRNNVYIDDISGLSTLSRLNKIEDISALSNLTNLQELTLENNKIENISASDLENLNKLVVSKNKIIDISPVANMV.................... 773
7 -52.600IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  18  11LVLMVTAILGLSLSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIAPA-TISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQ--PLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAEDITLYAQFTINSYT.......................................................................................................................................... 416
8 -50.500IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  19  36QVAPPAAIKDLFPDPAMKSLNLKKLNKKSTSDTVTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQITDISPVADLANLTTFYCGNNPISDISAVQNLTKLSIFNCYTANVEDISPVKNLNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNREIQKNISIENKVMDNFGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSYDFTTKITILNINATYSGTVIQPLTKDSTRPIITADGKVSYPTTKTTTEFLTDIHATTDDGSPIEVDLNALDFGT................................................................................................................................................. 443
9 -49.500IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  21  4KHNPRRKYCLISGLAIIFSLWIIIGNGTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT...................................................................................................................................................................................................................... 345
10 -47.900IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  22  1MKSKNNYFKQITTIMTVVSLLIMVLGIQSINQIFPDADLAEGIRAELQKSSVTDVVTKEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISDLRPLANLQMYSLRLGGNSISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITNISMLEDLTNLTSLGLQNNKISDISVLKNLTHVTYLQLGYNQIVDVKIIG--GLTNLTSLQLTQNHITDISPLANLTKIQYSDFSNQMITNLERNFSKTLSVPNNITSIDGTLIAPETISNNGT.................................................................................................................................................. 411
11 -47.700IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  12  3........KLVKIILALFLITTVFLPFSNVKAAPTDVVNIPDPVL---NSGLKNIIGNPFLDEITEANMATITVADLSNMSGAPGYPVT----GLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLNNISALGEMALEEVELGGDYITDFTPLLEKENLTSFSYNSYAWSEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEAMVAQGDYEGLQINNQTITLPTINIKKGATANSTN................................................................................................................................................................................................................................. 316
12 -46.700IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  16  10LCILLIMPFTISFSANVSAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDITE-AQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTIPDLNGLTNVTNLNLSSGKLDALTKFNKLNLTFLNLDNNSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFTTNTASSSTYFTLNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEYNAF................................................................................................................................................................................................................................................... 315
13 -44.600IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  15  1.......MSVKSNIVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVNIPD----STFKAYLNGLLGQASTANITE-AQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSIPNLSGLNLTLLDLSHSAHDDLTKINTLPKVTSIDLSYNAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKS---TASSDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARID...................................................................................................................................................................................................................... 319
14 -42.900IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  16  4..ALKLFLATICMFIMIYPSTAAHAEETNIVNI-PDANLKTYLNGLLKQASDAPITK-TQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKLFVDLNGLVNLQSLSINGSEVTHN-------------------VFKTFNKLPKLTYLYAQNSKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALATGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNT...................................................................................................................................................................................................................................................................... 268
15 -41.000IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  16  1..MKQRKTSVLHVLLVVTAILGISLWVN------ASHGMKAQAESIAQPAPINEIFTDPALADEVKTELGKTSVTDEVTQTDLNQITKLEADDKGINSIEGIQYLTNLNMLGVSSNQITNITPLANLTNLDSLYLGDNKISDVTPLSGLQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEVVPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPIVEAPVNYITTFDVDGTTTTENVV............................................................................................................................................................................................................................................ 299
16 -39.900IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  19  79...........EENTPKNNLKSTSENSKTYAELFPDVNLAKIIAKNISGTEINAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGFSLVKTLPELHTLEVLGNAITELDIENQPNLVTLSADELELKKLT-LKNLSQLNGLGRIASSISESVTLMNLPEIISVDISGNYLDSDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIDRLEKLVDVPKLATLNADKQAVTLSKTI......................................................................................................................................................................................................................................................................... 354
17 -38.300IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  19  3...........FNWKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKSSTLKNVNTPKNLKASPLANSTIADLFPDEGMAKTIANQLGRTENNN---------FQTPTKTDWKVDDVVTEVELNRMWYLTS-VATIGSIEGIQYLNLYDVRLQFDKCKDLSPFNGYSQLYRLNINNGNISDISPLTELSTLNDIDLGGNNISDLSLFPKLPNLEEISLERNNISDVSPLAKFTKIKIFNLDENHITDLSSLTKMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPVKITATKPKATIDPITS..................................................................................................................................................................................................................................... 313
18 -37.700IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  15  35IALKESQDVVNIPDPQLKKELNLYLNQAENADITE-AQMATFRNITLNSG-IKDLTGIEYLKNITTLSI-NNINASYEPIQTLSSLEKLVINGENVNAIPDLSVLSNLTFLDLSRTNIDDFSKISNIPNLNKLDISNNKITKISELNNLSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGDSFETDGFKNIKSSELTFDANASIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGTLSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYR.................................................................................................................................................................................................................................................. 346
19 -36.400IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  13  4TKIVIASLVSLT-MVSNPLLTFAATNDVIDNTTE-ITTDKETSSTQPTIKNTLKAGPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELTELD........................................................................................................................................................... 385
20 -35.000IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  21  86ETMNKNADESVT-VEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD-VSKNLALEELTCENNELTQLD-VSQNTALEYLYCPRNQLTKLD-VSKNSALRYLACDVNQLTNLDVSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLD-VSQNQALENLACDNNELKNID-INQALSLKELSCENNQLTNLD-TTQNLALEILYCDDNQLTDLD-VRKNVNLLILFCNNNQLTNLA----GETIAKVRCNNNQLKDVSSLPDYF............................................................................................................................................................................................................................................... 375
21 -32.700IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  17  3FPSIFNKIKPQS-IQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRIN-CAFLSKQNDIDLSGLNLSTQPP--GLQNFTSINLDNNQLTHFD-ATNYDRLVKLSLNSNTLESINHQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLEFVQ-LESCEWLQYLNLSHNQLTDI-VTGNKEELLLLDLSHNKLASL-HNALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEKIHFLTYLSSIKSLRLDNNKITRIENTSDIRSLFPIIKKSESLNFL-NISGENNCPTIQLMLFNLFSP................................................................................................................................................................................................................................ 317
22 -30.800IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  18  27...............KAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETSTITN-AMFNNVTDVSIMEFGAKEFPDITTIPHLKTLFFADPPGRLTRNLPNYQNYPEMDTITMSGNNLIGIPDFTGMALKQLYMSEMLITSDPNFNNIPLLITLDLSSNQLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTVNYTNLPSLESLNLDYNFLTELP--SNVLDTIYVQSQNGELPD............................................................................................................................................................................................................................................................................. 298
23 -30.800IDP01800 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1129 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  37  30.........................................................................................................................................................................................................................................................................................................................................................................EEYPEMIVFDDVPVNHWAYDDIMDVVYNKVMLGYGNGKFGVGDNVTREQVAAVLYRTLNLKKEGPLKNPYKDISATFFLDEILVLTKHGIFEGDEKGNFRPAAPVTRAETAQILTKAFTFEVK--KNHTFKDVPNNHWAKNAISALQSNHVIVGTGNGKFEPNKVVTREQYATFLNKAVF. 209
24 -30.700IDP01799 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1127 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  35  23...........................................................................................................................................................................................................................................................................................................................................................SANGVSANTDVTQKSSPNIMIEFDDVTTDHWAYDEITNLVYHRIMYGYGNGKFGTEDNITREQAAAVLHRALGLKRSVFDANPYGDISGTMFPYEILHLTNLGIFKGDENGNFRPKDTLTRAELAQILTKAYELK--AKSPHTFTDIPEKHWARDAISALQSNKVAVGTGDGKFEPEMLVTRGQFAKFLQRSID. 216
25 -30.400IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  16  12LLLTVLLLTITGGDLKAKAASDLYPLPAPIIDVFPDEGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETETITN-RAMFNNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGVTPDYQNYPEMVTITMSGSNLIGIPDFTGMDLSQLYMADMMITSDPDFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNELPSLAEINMLVNPTVLGSYSADIDTSELSPGVYNFNVQFNDAYPITQGCVYDWVLTVN............................................................................................................................................................................................................................................................... 367
26 -29.800IDP05609 putative S-layer protein [Bacillus anthracis str. Ames] BA_5054 [Bacillus anthracis str. Ames]  ali follow..  39  8...........................................................................................................................................................................................................................................................................................................................................................VTGAIVATTAFTSIGTAQASAGFKDVPNNHWSYKAIMDLANKNVVAGYGNGLFGFGDDVTREQVAALMFRHLKPTVKEQYNNPYKDITSTMFKKEILALTEMGVFVGDNTGKFRPKDSLTREEMAQILTRGFQLQIR--GDHNFPDVDRNGWANPAITAIKSNYITAGTGDGKFAPKMHVSREQYVQFLYNATL. 201
27 -29.400IDP01798 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1130 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  47  41...............................................................................................................................................................................................................................................................................................................................................................................AIFKDVPAGHWSYEAIQTLAEQEIMLGYGNGVFGFGHNVTREQVAALIYRALDLDEEFGEESPYNDIVSTMFPFEVLAVTELGIFTGDEKGNFRPKDTLTRAEMAQVLTRAFGLQVQ--GLAGFKDVPKGHWAENAINAVGSNGISVGDGNGNFAPNMKVTREQYAQFLFRAL.. 218
28 -29.400CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  34 1010..MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNA...................................................................................................................................................................................................................................................... 1303
29 -28.400IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  14  4..................................APTIKAQADTVPLPAPIIEAFPVIAEAIAGELDKDSVNDTITQADLDTAIPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVFPDANYPNLTNVDLSQNNFGFNPKFVGMEGLVSINMENAGLSGYIAWMNMPNLDSLILNENHLISIPEIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQALDFIAPS-NHDLIIIKDNGRTLYEPP........................................................................................................................................................................................................................................................................... 253
30 -28.300IDP05168 putative S-layer protein [Bacillus anthracis str. Ames] BA_1926 [Bacillus anthracis str. Ames]  ali follow..  46  7...........................................................................................................................................................................................................................................................................................................................................................LATGLITATLFGATNAHAQTEHFIDVPTNHWSKDSIDHLTEQKIISGYGNGKFGFGDNVTRGQVAAIISRYLKLENTGSTNKHFSDIHGHMFENNIKAVAQKGLMTGNSTDKFRPDDTLTRYEMAVILQKAFHLPVK--TNDLFYDVPNNFWATDSVRSLYSNGITKGIGNYQYGGEMNVTREQFATFMYKAIN. 199
31 -28.200IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  16  66LDLDRNNITRITKFAGLKNLRVLHLEDNQVSVIERFQDLKQLERLRLNKNKLQVLPEFQSTPKLTRLDLSENQIQGIPRFRGITDVKNLQLDNNHISCIEDFRALRDLEILTLNNNNISRILVFNHMPKIRTLRLHSNHLYHLRGFNVADVNIVDCRGKGLMEIP-----EGIVEIRLEQNSIKAIGAFTQYKKLKRIDISKNQISDIAPFQGLKSLTSLVLYGNKITEIAKFDGLVSLQLLLLNANKINCLRVFQDLQNLNLLSLYDNKLQTISLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKKLPNLRINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHG.......................................................................................................... 598
32 -27.900IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  11  2FPLNDLSLKTQSVLNKITSNTESTIKQHELVSDDAINELSSELVSCLGNDKFTPVSESNLLNMLSEFKLLREQCFRWGNTLLFENYGAYDKTGSITIEKSQEGTLPIRHKLEFISTNIAELLDLTKITDARLCKGFSDWASSVKEGASNHSNELNLSSLSLGSVPPL--PEWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISYIDSF--PPKAKKIFICHNKLSEIPAL--PDTAKVFDCSENNIKEIRWF--PKNLKEAYIEYNKIEVIPAI--PGNLKLLCMKCNPIKEA................................................................................................................................................................................................................................ 329
33 -27.400IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  2FPLNDLSLKTQSVLNKITSNTESTIKQHELVSDDAINELSSELVSCLGNDKFTPVSECNLLNMLSEFKLLREQCFRWGNTLLFENYESYDKTGSITIEKNQEGTLPIRHKLEFISTNIAELDKLTKITDARLCKGFSDWASSVKEGGSLHSNELDLSYLFLGSVPPL--PDWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISHIDSF--PPKAKKIFISHNKLSETPAIPD--TAKVFDCGYNKIQEIRYF--PKNLKEARIGYNNIEVVPAI--PGNLKILFMECNPIKEA................................................................................................................................................................................................................................ 329
34 -27.100IDP05044 putative S-layer protein [Bacillus anthracis str. Ames] BA_3338 [Bacillus anthracis str. Ames]  ali follow..  55  26...........................................................................................................................................................................................................................................................................................................................................................VGTANAQTTTNSYKVASNENTVFTDVPKDHWSKDAIDYLAAAGIYKGYGNGKFGFGDNITRGQVASLVNRHLGLIADDKQGNMFSDITNHMFEKDIKAIAQAGIMTGDGTGTFRPDDVLTRYEMAVILQKAFHLE--SKEQGKFKDVPKGHWAYEAVNTLRSNRIAQGDEAGNFNGNTFVKREQYAQFFYNAIA. 217
35 -26.500IDP02517 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2315 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  46  8...........................................................................................................................................................................................................................................................................................................................................................LAGAVLATSTFTSLTNAQAETGFRDVPSDHWSYNAIMGLKEKNIVAGYGNGMFGFGDNITRGQVARLIYAYLKPADEHNAPNPFTDVKGHMFEKEILSLSKAGIMNGFGDGKFGPDNVLTREQLAVVLTKAFNFK--ATSTTTFKDVDKNYWATNAISALQENKIAAGTGDNLFEPKNIVTREQYAQFLYNAMN. 199
36 -25.100IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  13  2................KKKFVYLLLLVLFMTVLPQMLEAQAASTSWIEQE----LDGNEPFIAETEKILSKNRQD--ITLADLETIQKIHV--FGADSIPNISDYKNLTALEANYGTITEVPEVGSLKELVTLNVDENNLQEFP--------------------MVIFQLPKLEVLYISRGNITEIPTITTLSHLKVLDVSNQKLVTIDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLE................................................................................................................................................................................................................................................................................................. 216
37 -24.900IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  42  40.........................................................................................................................................................................................................................................................................................................................................................................ADNTDSLKFNDVPANHWSTKAIYGLANRKVVAGYGNGQFGFGDNVTRGQVARMIYAYVKPADADASKNPFSDIKGHMFEKEILALAKEGLVAGYGEGKFGPDDILTREQMAQVLTNAFKFK--ATKTTSFTDIDKNSWALKAISALEENGVTIGTGDKLYSPYAHVTREQYSQFLFNSIN. 218
38 -24.800IDP02244 N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. `Ames Ancestor`] GBAA1818 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  41  9...........................................................................................................................................................................................................................................................................................................................................................LAVTVALQVVMAPATSFASTKEFPDVPKNHWALEAINDLTSKGVIAGYDNGKFGFGDVVTREQVAALMYRALKPEVKSDYKNPYSDISTTMFPEEILALTEMGIFVGDGKGTFRPKDSLTRAEMAVIIQNAFKFK--IKAQHTFNDVPSTHWANDAVSALESNGITAGNGAGAFNPTSVLTREEYAQFLFNAMA. 202
39 -24.400IDP01217 S-layer protein, putative BA_3695 [Bacillus anthracis str. Ames]  ali follow..  40  38...........................................................................................................................................................................................................................................................................................................................................................LTEKNGEVKAEEITPQTNHTGVFKDVPKGHWAYEAIQQLTDEKIVFGYDDGRFGFGDNVTREQVAALLYRYFNLAEEKNYENPYGDVSSTSYIKEILSLTEMGVFKGDEHGNFRPKASLTRAEMAQVLTNAFHLKAK--SNHTFNDVSTNSWASNAISAVQTNNIAKGVGGGNFAPNMDVTREQYAQFLYNAIQ. 231
40 -23.900IDP05156 putative S-layer protein [Bacillus anthracis str. Ames] BA_1093 [Bacillus anthracis str. Ames]  ali follow..  30  174........................................................................................................................................................................................................................................................................................................................................................................................TWAQESVQYLVDKEAVHGKPDGTFAPAESIDRSSAAKILATVLRLEIKKDAKPSFPDAQNHWATPYIAAVEKAGIVKGDEKGNFNPSGLINRASMASMLVNAYKLERNENIKLPKEFADNNHWGAKYANILIQEKISIGT-DNGWAPNKAVSRAEAAQFIAKADK. 338
41 -22.800IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  13  1.......MKKAFLCLSAIVLSLNFVWINPITGSASETTKETNQQVNLKNNVTDIVTSLGGQTWLNEVNRQLAPKT--LTFEDLAKITTISLNNRSLTG-PEIKNLVSLQRLYLFSNKLSG-AELGELTKLTELRLDYNELSGKIPDGLGNISEIALQNNRLVGQIPLSNRTGKNEVNVSGNQVTI-QSEPSVYSAYTYPSSTPEYSG-ANNSFISNLTNDMNLTPFLKNSPT---FINLQVVYMFNSELFDGHDVTITDTNDGRVLYDGTLT.............................................................................................................................................................................................................................................................................. 282
42 -21.100IDP05178 putative S-layer protein [Bacillus anthracis str. Ames] BA_3332 [Bacillus anthracis str. Ames]  ali follow..  27  162...............................................................................................................................................................................................................................................................................................................................................................................KPKDDITG-GWFEGHIRKLNSLGIMHGEGNGVFAPYRNVTRAEFATLISNALKLPE---GNKTFVDINHPSLHNGIKRSASAGIINGRGGGIFDPNASITREEASIMIDKALQYKGVTGELAALPFTDQLITYKQHVQRLYSLKVVTGVGNNEFNPKGTTTRGEAAAFLVKMLDA 335
43 -21.000IDP01190 N-acetylmuramoyl-L-alanine amidase, family 2 BA_0872 [Bacillus anthracis str. Ames]  ali follow..  25  180........................................................................................................................................................................................................................................................................................................................................................................................GWYEQDIRQLAARKIMFGDGNGSYWPNRLVTRAEFANLMSRALNLPA---GNAKFTDLNHPSLVDGINRAASAGIINGRGNNKFDPNATITRDEAVIMIDRALEYNWIYRKEVKLPFTDQLAYDKKALQNVYAYGIVKGNERNEFVPKGTATRAESAAFLNRMLKV 345
44 -20.600IDP05155 gene: sap; S-layer protein Sap [Bacillus anthracis str. Ames] BA_0885 [Bacillus anthracis str. Ames]  ali follow..  28  12...........................................................................................................................................................................................................................................................................................................................................................AGTMTAAMVAGVVSPVAAAGKTFPDVPADHWGIDSINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNLPIDKDAKPSFADSQGQWYTPFIAAVEKAGVIKGTGNG-FEPNGKIDRVSMASLLVEAYKLDTKGTPATKFKDLETLNWGKEKANILVELGISVGT-GDQWEPKKTVTKAEAAQFIAKTDK. 205
45 -20.300IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  22  755..........ARKAARGLNVGHLKLTFCSVGPTE-LQHLRRPVALQLDYNSVGDIG-LPCLGVCKALYLRDNNISDIECALHCEQLQKLALFNNKLTDAKLLACRQNFLALRLGNNYITAAEGLRGNTSLQFLGFWGNRVGDAQALAEASLRWLSLVGNNIGSALMLAKNVMLEELCLEENHLQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVDKLGCRDTRLLL.......................................................................................................................................................................................................................................................................................................... 1040
46 -19.500IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  18  138.HIEIEEATLTGNFSSYTVLESVRIERSNLSRVTSFALAEKVIIRDNNYPTAPSLLTTEGMSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNLDTSSVTNMYAMTSLEELDVSHFDTSSVTDMYRVKLKKLDVSNFDTSSATAMVQMSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSSVTNMAAMEKVEKLDLSTFDTSSVTNMGTMTALKSLYLDNTHAASSTDMTGTTSLSYLFVSHN-VSNFNGLENT...................................................................................................................................................................................................................................................................... 466
47 -19.000IDP05368 N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus anthracis str. Ames] BA_3737 [Bacillus anthracis str. Ames]  ali follow..  26  406........................................................................................................................................................................................................................................................................................................................................................................................GWYEAAIRELDKRGIMVGDGKGSYWPERLVTRGEFANFISRSLQLPE---GSSNFSDLNAASLIDGINRAASAGIISGRGNGIFAPNDTIKRDEVVIMIDRALQYKKIKGNLVPLPFSDQLAYDKQAVQRVYGLGIVKGNENNEFMPKGSATRGESAAFINRMLEV 571
48 -18.300IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  17  2...............................................................................................LKKIIALIALVVIINTVSFTSVSASTPTWLE----QTMNNNEPFIKEIANITQTDLEAIALRVTGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFPTVYQLPKLEELQLNDGTIEEIPA-NMASHLKFLTVNNNRLVKVPT-SSTGELDLFTTGNQIVTDIP........................................................................................................................................................................................................................................................................... 200
49 -14.800IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  1..MLPTSQLRPT-GTFCSYSAETSADIKSEITPIQIEEARASGRLYIKDCDIEYLPQL--PNEITSVTIENNNLTTLTGL--PVNTQNLSVINCEKLQITDM---STVKNLHIELTDSPFIHFIS--EGIECLTVCHCYISGVPE----SVRYLEIKGSATDSIKNVP--NGLSSLSINSYNPENQARIDNSPSLKTLSLTGSNIILPEKL--PESVTSVTIHAEKTTWNIGVEGMPDGLDLDLQN........................................................................................................................................................................................................................................................................................................ 232
50 -9.200IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  14  163...................................................VEDASTASALKAVNYKILENRRISIIINSSAPPHTILNELKPEQVEQLKLI-----MSKRYDGSQQALDLKGLRSDPDLVAQNID-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSL--VLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIP.......................................................................................................................................................................................................................................................... 424
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.