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Query: IDP00126 gene: mviM; putative virulence protein NT01ST1449 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRTLRIGIVGLGGIAQKAWLPVLTNTAGWTLQGAWSPSRDKALRICESWRIPYVDSLANLASSCDAVFVHSSTASHYAVVSELLNAGVHVCVDKPLAENLRDAERLVALAAQKKLTLMVGFNRRFAPLYRELKTRLGTAASLRMDKHRTDSVGPHDLRFTLLDDYLHVVDTALWLAGGEARLASGTLLTSESGEMCYAEHHFSADKLQITTSMHRRAGSQRESVQAVTDGGLYDVTDMREWREERGQGILIKPIPSWQTTLEQRGFVGCARHFIDCVQNQTVPETAGEQAILAQRVVEALWRDAISELast
1 -95.400IDP00126 gene: mviM; putative virulence protein NT01ST1449 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MRTLRIGIVGLGGIAQKAWLPVLTNTAGWTLQGAWSPSRDKALRICESWRIPYVDSLANLASSCDAVFVHSSTASHYAVVSELLNAGVHVCVDKPLAENLRDAERLVALAAQKKLTLMVGFNRRFAPLYRELKTRLGTAASLRMDKHRTDSVGPHDLRFTLLDDYLHVVDTALWLAGGEARLASGTLLTSESGEMCYAEHHFSADKLQITTSMHRRAGSQRESVQAVTDGGLYDVTDMREWREERGQGILIKPIPSWQTTLEQRGFVGCARHFIDCVQNQTVPETAGEQAILAQRVVEALWRDAISE 307
2 -85.900IDP05340 putative oxidoreductase [Clostridium difficile 630] CD3450 [Peptoclostridium difficile 630]  ali follow..  39  1MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKNNATEIVSINICKHGLNSLRNVRFDSTLIDDYIHVIDTALWLANEDVEISGEDLFLTDNKNLIFVSHKLKGKNFSINTSMHRDSGTKLEQVEILSKGKIQRVKNLNVLEIEEGGNLTLKQSGAWVNILKQKGFEDISNHFIDCIENNIKPAINGEECIKAQRLLEKIINSVK.. 305
3 -77.400IDP00570 putative oxidoreductase YPO2042 [Yersinia pestis CO92]  ali follow..  59  234MKKLRVGIVGLGGIAQKAYLPILTQAQGWQLVGAFSPNQAKAQPLCDSYRMRYFSRLDTLAAASDAVFVHSSTASHFQVVHDLLQAGVHVYVDKPLAETREQSEQLIELADKQHLALMVGFNRRFAPLYQQLKQQASSPVSLRMEKHRLSSIGPHDLGFTLLDDYLHVVDTALWLGGEGARLTGGAVQTNAQGQMLYAEHHFQQGGCLITTSMHRQAGTQRESVQVISDGACYHITDMRQWQQASAGQVISQPAPGWQTTLEQRGFTGAVHHFIEAVSNQTRPQVSGEDAIVAQRMIERILQQ.... 536
4 -62.800IDP02458 putative oxidoreductase [Yersinia pestis CO92] YPO2259 [Yersinia pestis CO92]  ali follow..  19  3.DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH--ADWPAIPVVSDPQMLFNSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHREQAGAGGGIWYDLGPHLLDQALQLFGLPETDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAAAE--TARYIVHGTQGSYIKFGVDPQEDRLKAGEHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTAPNPVPATEAIKVMELIELGIASDQQ. 339
5 -60.500IDP91405 dehydrogenase [Vibrio vulnificus CMCP6] VV1_0801 [Vibrio vulnificus CMCP6]  ali follow..  18  2.....IWLIGSGLMSID-YAKVLDAQG--CDYQVVGRGSDSAASFTEKTGKAICGGLAQHIAVAEAAIVSVGVAQLYETTKQLIEAGKKILVEKPGATTLAEIEELRQLSEQHGCAVYIAYNRRFFSSVLEAQRLIEQEGGVTSFNFELTEWAHEVLNKWFLANSTHVADLAFYLGGKPRDFIQGSLNWHQAGSVFSGAGMTEQGALFNYAANWESAGRW--SVEVLTKENRYVFRPMEALQVQKRGTIPLVAVEDALDKEFKPGLFKQVEAF---LGDDARLLCRLEEQCSLFPIYEKMA...... 309
6 -57.300IDP95263 MviM protein [Acinetobacter baumannii ATCC 17978] YP_001083150 [Acinetobacter baumannii ATCC 17978]  ali follow..  11  1.........................MDVNDSVGIMDSHFPEAEFFTEFEEFEAYVEDQKLKGKLDYVAICSPNYLHAPHMKYALKNGIDVICEKPLVLNSEDLNMLAEYEKQYGAKVNSILQLRLHPSIIALRDKVQAAPADKVFDVDLTYLTSRGSGGVATNIGVHFYDMLHFIFGK----IVKNEVHYRDEKTASGYLEYERARVRWFLSIDANNLPENAVQGEKLTYRSITIENEELEFSGGFTDLHTQSYQR--VLEGKGYGVEENRAAIETVEVRVSPIIENPENPHP--LLAKVKKA.... 285
7 -11.200IDP06105 gene: dapB; dihydrodipicolinate reductase [Helicobacter pylori J99] NP_223178 [Helicobacter pylori J99]  ali follow..  12  1...MKVGVYGAGRIGKLLLEELKGGYKGLELSSVFVRQKCETDFSSFSHAPLVTNDLKAFVKACECVVDFSLPKGVDHLLDVLLECPKILVS--TTGLEKETLEKMQKLALKAPLLHAHNMS--LNQLAFLTSLKLKDADIEIVETHHNLKKDAPSGTALSLSIGIATL-----VAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLKDKAAKKYEISEMFG............................................................................... 254
8 -10.900IDP02179 gene: proC; pyrroline-5-carboxylate reductase [Coxiella burnetii RSA 493] CBU_2090 [Coxiella burnetii RSA 493]  ali follow..  13  1MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDI---LSETKILVISLAVGVTTPLIEKWLGKASRI----RAMP---NTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLDQIEKIAALSGSEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKVLES................................................................... 247
9 -10.800IDP02492 gene: proC; pyrroline-5-carboxylate reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT1559c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  1...MKICFIGGGNMAAAMIAGMTSHGYKSQDIIVFDRNEHKCLNLIKKYNINTSTSLLNTIKLADVLILAIKP----QNMFELIKNIRDTVTSTQVIVTVAAGIQTSAYEELFNKEISF----RTIP---NTPSSLGYGATGIFFNKVIAADKKDLVIDIMQTMGVKEIDIVAAIASSEHMVEAAIKQGLDKKQAEKLVVQTCLGAAQMALNTNENMSELRKNVTSKKGITYEALNIFEQ................................................................... 243
10 -10.400IDP02226 gene: yqjI; 6-phosphogluconate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA0164 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  1MENLQIGVVGVGVMGKSLALNFESK------VALYDISKEKVDETIEE-NLVGTHIVEEFVNSLESPRKILLMVNAGEITVPHLDKG-DILID---NTYFVDTIRRNKRLAEEGISIMPGGQKDAYEKVKDMLENISAKVNNEPCCSYIGP----NGAGHYVKMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNS.................................................................................................. 228
11 -10.000IDP06299 6-phosphogluconate dehydrogenase [Streptococcus pneumoniae TIGR4] NP_344902 [Streptococcus pneumoniae TIGR4]  ali follow..  10  1MTKANFGVVGMAVMGRNLALNIESRGYTVAIYNRSKEKTEDVIACHPEKNFVPSYDVESFVNSIEKPRRIMLMVQAGPGTLPHLDKG-DILID---NTFYKDTIRRNEELANSGISIMPGGQKEAYELVADVLEEISA......................................................................................................................................................................... 161
12 -10.000IDP00140 pyrroline-5-carboxylate reductase, putative BA_0197 [Bacillus anthracis str. Ames]  ali follow..  13  2LTKHRILFIGAGRMAEAIFSGLLKTEYIEEIIVSNRSNVEKLDQLRARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAETVAAGISP---SYLEERLPGGTPVAWIMPNTAAEIGKS........................................................................................................................................................................................... 131
13 -9.940IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  14  1...MKIGWIGLGAMGTPMATRLRDA------VSVYNRTESKAAPLKEK-GVAVYTSPIDLAAKVDLVFTMLSDKAAIDLEKIAQKHQAT-YLEAPVSGSVGA-------AKAGALLILAAGDEEVISKLKPVLAHLGS......................................................................................................................................................................... 152
14 -9.920IDP04598 dihydrodipicolinate reductase [Bacillus anthracis str. Sterne] BAS1442 [Bacillus anthracis str. Sterne]  ali follow..  14  1MKEMKVIIAGPGRMGHEA-VLLMERTEHFNLVAAVDYKHGGEK--MPALDATIYADLHTCLEEADVLLDLTTPEVGKQHVTLAVERGLRSVI--TTGFTEEELKQLTETAKEKAVGTIIAPN--FAIGAVLMMKFSQMAA....................................................................................................................................................................... 143
15 -9.470IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  15LKEKKVAIIGYGSQGHAHAQNLRDN--GFDVV-VGLRKGKSWDKAKED----SVYTVAEAAKQADVVMILLPDELQPEVIAPNLQAGNSLVFAHGFNVHFVNVDVFLVAPKGPGHLVR............................................................................................................................................................................................. 137
16 -9.390IDP90617 gene: argC; N-acetyl-gamma-glutamyl-phosphate reductase [Yersinia pestis CO92] YPO3927 [Yersinia pestis CO92]  ali follow..  20  2...LNTLIVGAGYAGAEL-TAYLNRHPHMNITGLAVSAQSADA--ILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVV-FDLSGAFRVRDAAFYSQ....................................................................................................................................................................................................... 116
17 -9.380IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  8  16IKSKKVAIIGFGSQGHAHAMNLRDN--GVNVT-IGLREGSVSAVKAKNAGFEV-VSVSEASKIADVIMILAPDEIQADIIKPNLSEGKAIAFAHGFNIHYGQIVV.......................................................................................................................................................................................................... 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;