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Query: IDP00178 putative ABC transporter, integral membrane protein YPO3405 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTRLYWIALQSIWIKEITRFARIWIQTLVPPVITMSLYFVIFGNLIGARIGDMGGFDYMQFIVPGLIMMAVITNAYSNVAASFYGAKFQRSIEELLVAPVPTHIVIIGYVGGGVARGICVGILVTIISLFFVPLHVHSWSMIALTLILTAILFSLGGLLNAVFAKTFDDISLVPTFVLTPLTYLGGVFYSLSLLPPFWQAVSKLNPIVYMISGFRYGFLGITDVSLAYTIGVLVVFIAVFYAWAWYLIERGTGLRTLast
1 -100.000IDP00178 putative ABC transporter, integral membrane protein YPO3405 [Yersinia pestis CO92]  ali  100  1MTRLYWIALQSIWIKEITRFARIWIQTLVPPVITMSLYFVIFGNLIGARIGDMGGFDYMQFIVPGLIMMAVITNAYSNVAASFYGAKFQRSIEELLVAPVPTHIVIIGYVGGGVARGICVGILVTIISLFFVPLHVHSWSMIALTLILTAILFSLGGLLNAVFAKTFDDISLVPTFVLTPLTYLGGVFYSLSLLPPFWQAVSKLNPIVYMISGFRYGFLGITDVSLAYTIGVLVVFIAVFYAWAWYLIERGTGLRT 256
2 -28.600IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]  ali follow..  16  2........FISVLRRELKIAFRK-GAEIVNPLWFFLIVITLFPLGIG------PEPQLLARIAPGIVWVAALLASLLSLERLFRDDFYDGSLEQLLLLPTPLPLTVLGKVCAHWVVTGLPLLVLSPLVALLLSLDVNTAIAMGLTLLLGTPTLSFIGAIGVALTVGLRKGGVLLSLLVLPLYI----------------------PLIFATAAIDAASMAMPIDGYLAILGAMLAGSVTLAPFAT........... 210
3 -9.640IDP92706 putative membrane protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] ABD22093 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  11  1.................MRILNLVKYDFYSIFKSPLTYLAILSLIATQSILMANSMDNPKHIIVYGSVFAALIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILIVV-NLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPFIKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDFSNWQWVISLGSIVIFFIL................. 236
4 -8.010IDP92707 putative membrane protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] ABD20650 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  7  1........MKALLIRNFKLRRYTLIIYVLLLTLYPFYIML--------------DSTKFFYLLQSFISPTILIIWILDAGHLFRLNRRLGGNDSYYSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVI------------------------SNFLSIPIAFSQFTELRRVKVP-YVFTIIILVPFLFSIAIV--VLSQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINT 218
5 -7.090IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]  ali follow..  9  573............................LDALKVPKYYVL--NPGYSEYKENADRLTSLSTAFPIFFFLIAALVCLTTMTRMVEEQRTQGTLKAF----YSNGSIILKYLVYGSIASVIGSVLGILIGFQFFPNIIFNAYKSMYEMSLLALFVALFCTTFTAYVACRAELRANAATLMRPKAPKIGKRIFLERISFIWKRMNFTSKVT-----ARNLF--RYKQRMLMTVLGVAGCTALILT.............. 790
6 -6.510IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  13  5........TNKLAVSNLIKNRKLYYPFALAVLLAVTITYLFYSLTFNPKIAEIRGGTTIQATL--VTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKEVGAGIGIGALFDKLIFAFLLKLMKLKVEQMNVVIAVLVVFGLIFLGLMFLNALRIARMNALQLSTTFFLAVLLVIFGTYLLFNAGITVFLQILKKNKKYYY-QPNNLISVSNLIFRMKKNAVGLATIAILSTMV............. 296
7 -5.630IDP91193 Stage III sporulation protein AF BAS4092 [Bacillus anthracis str. Sterne]  ali follow..  15  2..........................QFVTEWIRNIIVFLLLATMLHLILPNSNLQKYVKFVV-SLLLVVLILTPLFKL................................................................................................................................................................................. 53
8 -5.540IDP90417 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_504 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  13  1.................MYFTRDP---VIETVITS-------GYKL--SIRNSKHLSQDPFVVEAIEVVRLGETSFFRNC-----DHSKPFL-----LPASDYEVMEIRDAKINLKAV.......................................................................................................................................... 81
9 -5.460IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]  ali follow..  11  392.............QEGFVEDIDTNINLVRKRLPVLDLQTKEM--IVGEFSKTKVVMMYLDNLAKDNVDFLEESLRALEYDQINDSAYIQELMGEKSIFPTERTDRVTKALIDGKIAIFVDGSVLLTPVSYFDFFISPEDYNVSWLYATFSRILRLIAVLFSICATPLYVAVLNYHYELIPSDLLETLILSRAQVPDLLREAGARLPVGQTLGIVGGIVIGQASAGLTSNILLIIVALSALASFITPIYKMGNAVR. 656
10 -4.990IDP06405 gene: ORF57; ORF57 [Human herpesvirus 8] YP_001129410 [Human herpesvirus 8]  ali follow..  8  280..........................QTLGAFVEEQMTWAQTVVRHGGWFDEKDIDIILD-TAIFVCNAFVTRFRLLHLSCVFDKQSELALIKQVAYLVAMGNRLVEACNLLGEVKLNFRGGLLLAFVLTIPGMQSRRSISARGQELFRTLLEY--GDVMGLLNVRNSECAAATRAAMGSAKFNKGLFFPLS................................................................ 455
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.