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Query: IDP00206 putative heat shock protein YPO1706 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMRIALFLLTNLAVMLVFGLVLSLTGIQSSSVQGLMIMAGLFGFGGAFVSLLMSKWMALRSVGGEVIERPRNETEYWLLETVRRQSQQVGIAMPQVAIYQAPDINAFATGARRDASLVAVSTGLLQNMSRDEAEAVIAHEISHVANGDMVTMTLIQGVVNTFVIFISRLIAQIAAGFLSGDRDGESNSPGNPMVYFAVSMVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEAGSMMAFCINGKSKTFSELFMSHPPLDKRIEALRSGQYLKLast
1 -107.000IDP00206 putative heat shock protein YPO1706 [Yersinia pestis CO92]  ali  100  1MMRIALFLLTNLAVMLVFGLVLSLTGIQSSSVQGLMIMAGLFGFGGAFVSLLMSKWMALRSVGGEVIERPRNETEYWLLETVRRQSQQVGIAMPQVAIYQAPDINAFATGARRDASLVAVSTGLLQNMSRDEAEAVIAHEISHVANGDMVTMTLIQGVVNTFVIFISRLIAQIAAGFLSGDRDGESNSPGNPMVYFAVSMVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEAGSMMAFCINGKSKTFSELFMSHPPLDKRIEALRSGQYLK 293
2 -85.000IDP91935 heat shock protein HtpX [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100001517 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  26  11.RKTWILLLVFFLLLALVGYAVGY--LFIRSGLGGLVIALIIGFIYALSMIFQSTEIVMSMNGAREVDEQT---APDLYHVVEDMALVAQIPMPRIFIIDDPALNAFATGSNPQNAAVAATSGLLAIMNREELEAVMGHEVSHIRNYDIRISTIAVALASAITMLSSMAGRMMWWGAGRRRSDDDRDGNGLEIIMLVVSLLAIVLAPLAATLVQLAISRQREFLADASSVELTRNPGMINALDKLDNSKPMVDDASSALYINDPKKGGFQKLFYTHPPISERIERLKQM.... 299
3 -37.800IDP00190 putative lipoprotein YPO0927 [Yersinia pestis CO92]  ali follow..  18  1MKIRTSMIALSLAALLSGCQSLNTEGLMQSGAQAFQAATLNDADVKAL-----SEKSCVEMDQKAQIASADSQYGKRMAKIAAALGDNINGTPANYKVYVTKDVNAWAMGC------IRVYSGLMDMMTDNEVEGVVGHEMGHVALGHTRKAMQVAYGTTALRTAIASAGGVVGT------------------------LSQSQLADLGEKLVNAQFSQKQESEADDYSFDLLKKRGLVTSFEKLASMEAGRNSS----------------MFDDHPSSQARAEHIRQ..... 244
4 -32.600IDP91379 Zn-dependent protease with chaperone function [Vibrio vulnificus CMCP6] VV1_1473 [Vibrio vulnificus CMCP6]  ali follow..  16  142.........................................................LDLQLQPSQLPEEQQSAIRQRVQQFAQVLPELPYDIKVEFRSMPEGANAFAL-----GGTIVLLDELVALATQQQLDSIILHEMGHVHHRHMMKQVVHSTILSVAV----------------------------SLITGESSGIVDNLAGVGVFIVSNGQSREAETQADLYAKKAMKQEPLAEMFELFKTQEMMDIPE----------------WFSSHPNFSERIQAARE..... 330
5 -32.600IDP00182 M48 peptidase family protein YPO0398 [Yersinia pestis CO92]  ali follow..  20  154......................................................................PAERQEAIQQLFLQVMPPQRTPLKLVLMTAPTTANAFML-----DGTMVISDDLIKLTSDDALAAVMLHEMGHHAHRHSMQMVVRSSLVALTFMWMT------------------------------VNGIGDTLLQSAAFIHEMQFSRTIESEADSWAIAEMQRLAMEDIYHALQQTTTPEEAET---------RAGIPEWLSSHPDMPARLDVIRA..... 340
6 -27.100IDP00225 putative exported protein YPO3069 [Yersinia pestis CO92]  ali follow..  17  51......................................................GDFYVRQMRASAPLIYDPLLTQYINTLGNRLVANANSV--HFYLVNNDQINAFAFF----GGNVVLHSALFRYTNESELASVLAHEISHVTQRHLARAMEEQQRLAPLTWVGVLGSILLTMASPQAG------------------MAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRQAMPNFLQKLADQSR--------------YVSKPPEMLLTHPLPDSRLSDARN..... 256
7 -13.200IDP00191 conserved hypothetical protein YPO0932 [Yersinia pestis CO92]  ali follow..  14  1............................................................MSTLRIPIALQQAVMQCLRHYLQLANQHLGTAYPEPKVNYHQRGTN--AGSYLQSFEIRLNPVLLLENKQPFIDEVVPHELAHLL.................................................................................................................................................... 84
8 -11.100IDP00224 putative membrane protein YPO3058 [Yersinia pestis CO92]  ali follow..  13  73..........................................................AVSTQDDQYAKFTSVILADTEDTWKPIFQKMGRTYPKLVMYRGAVMGPFYC---PADSTIYIDLSFYEDMKNKLQAYVIAHEVGHHVQH-------LMGIDAKV----------------RQQQQGVSQAEG------------------------NRLSVKMELQADCFAGVWGKAMEEQQVLEGDLQEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYTWFKRG.... 273
9 -10.400IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKILSLLVAFVCLWSIL----------------LPGQEADAAAKINSWDLVDSSKHLDYSGNSKYMSFIQSGANTWNAYKKGVIRPASGANKSDVYCSDISANNNINATTY-SNGKITFNKKNMDKKNNAGKQNVATHELGHGL.................................................................................................................................................... 128
10 -8.960IDP91447 ribosomal protein L22 [Vibrio vulnificus CMCP6] VV1_0393 [Vibrio vulnificus CMCP6]  ali follow..  15  42.................................................................................VSELAKHLGITVRYE--MQDEESGSLKKEKKSGSWVMTVNS----LHHPHRQRFTIAHEIAHRIRHAANNDCFED-----------------------------------------------------TTFFRNGETNWMEAEANDFAASLLMPKDAFDNFIANVSSKVEDVAMHFQV---------------SSHAVRIRAKVL....... 173
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.