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current user: public |
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| Query: IDP00406 hypothetical protein YPO3410 YPO3410 [Yersinia pestis CO92], from CSGID |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . | |||||||
| # | Score | Template | Links and tools | %id | First | MKRTTLVMLLLTLCGFSSASFALSESEAEDLADLTAVFVYLKNDCGYQELPNNEIKRAIVYFAQQNRWDLHNYDSFNMKALGEDSYRDLRGIALPTPVKCKSLARDSLSLLAYAN | Last |
| 1 | -70.600 | IDP00406 hypothetical protein YPO3410 YPO3410 [Yersinia pestis CO92] | ali | 100 | 1 | MKRTTLVMLLLTLCGFSSASFALSESEAEDLADLTAVFVYLKNDCGYQELPNNEIKRAIVYFAQQNRWDLHNYDSFNMKALGEDSYRDLRGIALPTPVKCKSLARDSLSLLAYAN | 115 |
| 2 | -59.500 | IDP93825 secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007735 [Yersinia enterocolitica subsp. enterocolitica 8081] | ali follow.. | 18 | 10 | ...WFLPLVLLTGCQQNKPVQPTAQQQIKQLSALVAGAHYLQKDCQIKDVPDEVLVKTALKLATARHWDTRAPAYKLLGEHSRERYLALVKENSGEKSLCNELNLLMVDFVDEAQ | 124 |
| 3 | -56.700 | IDP95127 pullulanase-specific type II secretion system outer membrane lipoprotein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917879 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] | ali follow.. | 23 | 5 | LIFPLCMVALLSGCQQKPASTISSQAQLEQLSSVAAGTRYLKNKCNRSDLPADTIYRAAVNVGKARGWGNIDV--ATLSQNSDRLYQQLLQDSTPEATQCSQFNRQLAPFIASLR | 122 |
| 4 | -10.000 | IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames] | ali follow.. | 9 | 1 | MKKLLTASILLIGCSTKKEKAGMNLEKAQKVEIESL-----TDSSEKKVITDKKEIEKLFEVMKMDKWEMQSAPLDTPQGKTFKMYQE........................... | 90 |
| 5 | -8.680 | IDP04330 stage III sporulation protein SpoAB [Clostridium perfringens ATCC 13124] CPF_2086 [Clostridium perfringens ATCC 13124] | ali follow.. | 18 | 1 | MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIALKAKSPIKELFNEISFKLKNNEVENVYMAFKESINEHKKEMNLRNKDFEILLDL. | 114 |
| 6 | -8.450 | IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99] | ali follow.. | 13 | 10 | LGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDR---SDAMTSYYINVIVYELQKLGFYNVFTQAEF...................................... | 83 |
| 7 | -7.380 | IDP91374 outermembrane lipoprotein [Vibrio vulnificus CMCP6] VV1_1919 [Vibrio vulnificus CMCP6] | ali follow.. | 16 | 1 | MKNIGLLLLFLAGCTTPTHLPLSGSQAIQYLGTVTGNE---GHWYSYLFFSNDTMMQGAVNDLKNNAKELDADTIFVIAPQAFVTSFSLLGT----AYRCQ.............. | 110 |
| 8 | -6.930 | IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124] | ali follow.. | 30 | 1 | MKKIIIFALLFVGCTNSSNSSSDSSVEIINSNQ.................................................................................. | 40 |
| 9 | -6.780 | IDP05148 putative lipoprotein [Bacillus anthracis str. Ames] BA_0177 [Bacillus anthracis str. Ames] | ali follow.. | 12 | 1 | MKKLVLAISLGVGCSNEKTAKTDEPKKESVQKE--------------KELTAKDVFKKTNEAFKN.................................................. | 57 |
| 10 | -6.360 | IDP05672 hypothetical protein lmo0778 [Listeria monocytogenes EGD-e] lmo0778 [Listeria monocytogenes EGD-e] | ali follow.. | 10 | 1 | MKKKWLLLILSVIVLCAIIFGIKWLLYRDNLVEMMQDTLYIVSYEPAKQEDALEKIGEIEHRIRHYRIPNKNFTSNYLSEGTE--LYKAKNGDEFPRTILFKEDGEYFIASEAMK | 115 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67. |