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Query: IDP00461 gene: tyrA; bifunctional chorismate mutase/prephenate dehydrogenase YPO3285 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVAELTALRDQIDEVDKALLDLLAKRLHLVAEVGEVKSRYGLPIYVPDREAAMLASRRQEAGALGVPPDLIEDVLRRVMRESYTSENDKGFKTLCPELRPVVIIGGQGQMGRLFSRMLNLSGYQVRTLEQEDWSQAESILADAGMVIVSVPIHITEEVINRLPKLPADCILLDLASVKNKPLQAMLAAHEGPVLGLHPMFGPDVGSLAKQVVVYCDGRDPQAYQWLLEQLQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSEDNLALIKRYYKRFGEALTLLEHHDKQAFVQSFEKVEHWFGDYAERFLVESRSLLRQANDNRQLast
1 -95.100IDP00461 gene: tyrA; bifunctional chorismate mutase/prephenate dehydrogenase YPO3285 [Yersinia pestis CO92]  ali  100  1MVAELTALRDQIDEVDKALLDLLAKRLHLVAEVGEVKSRYGLPIYVPDREAAMLASRRQEAGALGVPPDLIEDVLRRVMRESYTSENDKGFKTLCPELRPVVIIGGQGQMGRLFSRMLNLSGYQVRTLEQEDWSQAESILADAGMVIVSVPIHITEEVINRLPKLPADCILLDLASVKNKPLQAMLAAHEGPVLGLHPMFGPDVGSLAKQVVVYCDGRDPQAYQWLLEQLQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSEDNLALIKRYYKRFGEALTLLEHHDKQAFVQSFEKVEHWFGDYAERFLVESRSLLRQANDNRQ 373
2 -94.100IDP91227 gene: tyrA; T-protein [Escherichia coli CFT073] NT04EC3201 [Escherichia coli CFT073]  ali follow..  86  1MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVSDAGMVIVSVPIHVTEQVIGKLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ 373
3 -43.300IDP05722 gene: tyrA; prephenate dehydrogenase [Bacillus anthracis str. Ames] BA_2954 [Bacillus anthracis str. Ames]  ali follow..  15  7...........................................................................................SLEMRQMRKKVVLIGTGLIGGSLALAIKKDHVTITGYDIFQEQDLQHACEEAHLIVFASPVEETKKLLHKLAHLREDVIVTDVGSTKGSIMNEAEASKEISFIGGHPMAGSHKTGFENAFYILTPMVPNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGIVSHFPHLIAAGLVKQVEKHAGDNPLIHQLAAGGFK----DITRIASSSPKMWSDIVKQNREHLVLLKEWISEMEDLYDTVSSGDAGEIQNYFADAKEYRDSLPVRAIPAYHDLYVDVLDK.. 316
4 -32.800IDP00319 chorismate mutase, putative CBU_2070 [Coxiella burnetii RSA 493]  ali follow..  28  39..DTLDCVRDRIDLIDQKIVLLIKDRLMYVQRAAELKKG-KKSIHDQVREDKILASVSQQAEKAGYSGEIVKAVFKTILHQSNNYEKR............................................................................................................................................................................................................................................................................................. 123
5 -27.300IDP02059 chorismate mutase [Yersinia pestis CO92] YPO1353 [Yersinia pestis CO92]  ali follow..  15  18IASSFFLSLAVQAQQCGQTAPLINERLSYMKDVAGYKAENHLPIEDRIQEEKVINSAMAQAESLGLNGESIKPLMVAQINAAKAIQYR............................................................................................................................................................................................................................................................................................. 105
6 -27.100IDP91298 chorismate mutase STM1269 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  26  13LMCSTTFADSVTSVSLGALLTALNERMLLMKDVAAYKMKHHLPIEDFTREQNVFAEAEEEAKNNGLDPHSITPFIRSLMDASKAIQYR............................................................................................................................................................................................................................................................................................. 100
7 -22.700IDP91304 gene: pheA; chorismate mutase P/prephenate dehydratase STM2667 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  5..NPLLALRDKISALDEELLALLAKRRALAIEVGQAKLLSHRPVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPHSARIAFLGPKGSYARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIETSSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLVYSHPQPFQQCSKF-------------SRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQNITRFL---LARKAINVSDQVPAKTTLLIATGQQAGALVEALLVLRNIMTKLESRPIHGNPWEEMFYLDIQANLESQVMQSALKELGEITRSM..... 369
8 -22.600IDP91228 gene: pheA; P-protein [Escherichia coli CFT073] NT04EC3200 [Escherichia coli CFT073]  ali follow..  14  5..NPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSARIAFLGPKGSYARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIETSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLVYSHPQPFQQCSKF----------NRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQNFTRFVVLASDQVPAKTTLLMATGQQAGALVEALLVLRNHSLIMTR....................................................... 327
9 -22.600IDP91292 gene: pheA; bifunctional chorismate mutase/prephenate dehydratase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] SPA2526 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]  ali follow..  16  5..NPLLALRDKISALDEELLALMAKRRALAIEVGQAKLLSHRPVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPHSARIAFLGPKGSYARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIETSSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLVYSHPQPFQQCSKF----------SRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQNITRFLVLASDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTK....................................................... 327
10 -22.400IDP00301 CBU_0983 [Coxiella burnetii RSA 493]  ali follow..  10  6..KALLELRKKIDEIDYQIHDLLNLRASYALKIAKVKVAEETKFYRPEREAEILERITAHNKG-PLSAKAIAIIFKTIMKKCRDLQIDSYPELKKMKSIGIQGTKGSFSEIAAQEFAKTQHIDDFAVKYLISSENVLRAIENIDFGILRWKMRKAASSLRALKRXRNTAARLSICFISLSVKTXLPPLGKLLKFIHTVKPYANAVNFXQPTFGAAPLLKRTTQPSPRVVSKPESYQKQRLLLLIKP-----VQKYTTSNFXKKIFTISKTTXPSSXALKFMNP.......................................................................................... 289
11 -20.600IDP91432 prephenate dehydratase [Vibrio vulnificus CMCP6] VV1_0487 [Vibrio vulnificus CMCP6]  ali follow..  11  6..LSLDEIRLRLNDLDDQLLSLLSERRKLSIEVAKSKVETSKPVRDASREQQLLVKLITNGREKYLDAQYITKLFHTIIEDSVLLQQSQNLLNPEQSRKPLARVAFLGSKGSYSREYFSRKNTELIELNCDHFKEVTQTVESGHADFGVLPIETSSGSINEVYDLLQHTTLYIVGELTQPIEHCLVATKDVRLLYSHPQPHQQCSEF----------GRLKGVTLKSCASTADAMKKVQELNRDDVAAIGNASSGKLYGLQPIQGNIANQTENHTRFIVVASAQIPAKTTLIMSTSQKAGSLVETLLVLQRYGINMTK....................................................... 331
12 -20.400IDP90772 gene: pheA; chorismate mutase/prephenate dehydratase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0316 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  1.MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIYRPERERAIINRLKNANLG-LLDQNAIEAIYQEIFAVSRNLEMPQT-------------IAYLGPEGTYTHQAARSRGAMSRYIALANIEDVFKELSNKEAKYGVVPIEAVGITLDCLGKYNELKIFGEI-DIHHSFVGINENLKEIKRIYSHPQGYNQCRKF----------ESHELSAIEFVPSKSTANAAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKTSILAHTAHKPGGLS----FLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVKKALKDIQEI......... 343
13 -19.500IDP00804 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase SACOL1787 [Staphylococcus aureus subsp. aureus COL]  ali follow..  27  1MSNKLESYRSEIVSLNHQILDLLSKRGELAQKIGEEKLKQGTRIYDPQREKEMLNDLIDSNKGPFNDNT-IKQLFKEIFKASTDLQKSENEK......................................................................................................................................................................................................................................................................................... 91
14 -17.700IDP01211 chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase BA_2958 [Bacillus anthracis str. Ames]  ali follow..  14  4..HELDQLRKQVDEINLQLLHLLNKRGEIVQKIGEQKQVQGTKRFDPVREREVLDMIAENNEGPFETSTVQHIFKTIFKASLELQEDDNRKALLVSRKKKQTFIMGPCAVES-VGQAMKDQGLKLQGLGVEGLQILRQVADEFDLAIISEILNP-----NDVEMALDYVDVIQVGARNMQNFDLLRAVGK-----------------VNKPVLLKRGATIDEFINAAEYIIAQGNDQIILRATRNTLDISAVPILKKETHLPVVVDVTHSTGRRDLLLPTAKAALAIGADAVMAEVHPDPAV------AQQMDIPEFHRFMEELKGFKNKL.......................................... 357
15 -17.000IDP00348 gene: aroA; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase lmo1600 [Listeria monocytogenes EGD-e]  ali follow..  11  2VNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGALEGLKILKRVSDEYGLGVISEIVTPAD--IEVALDYVDVIQIGARNMQNFELAGRVDKPILLKRGLSATIEEFIAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAA-LAIEADGVMAEVHPDPAVALPEFEEFWNAILASNLVPHK........................................ 359
16 -13.200IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  19...................................................................................................KKVAIIGFGSQGHAHAMNLRDNGVNVTIGLREGSVSVSEASKIADVIMILAPDEIQADIFNVKPNLSEGKAIAFAHNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESKNAKNLALSYASAIAETETDLFGEQAVLCGGLSALIQAGF-ETLVEAGYEPEMAYFECLHEMKLIVDLIYQGTAEYGDYITGPKIITEETKKAMKGVLKDIQNMHAERKNMNDSLIEKTGRNLRAMMPWISAKKLVDKDK.......... 339
17 -13.100IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  16  3.....................................................................................................IGWIGLGAMGTPMATRLRDAGLEVSVYNRTESKSPIDLAAKVDLVFTMLSDKAAIDAVPKFWEQMSKKIVVNMSTIAPLESLSLEKKHQATYLEA-PVSGSVGAAKAGALLILA-AGDEEVISKLKPVLAHLGSQTFYLGKVGQGTGAKLSNSLLAQMGVAYSEALKRLGVDAESFLQIIGQS-NYPAAFSLKLMAKDIRLAKNEAGEAMKLPFLFQAEELYSQAEKSGLGGLDMAAVYHYLEKGEH......................... 285
18 -11.400IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  18...................................................................................................KKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSTVAEAAKQADVVMILLPDELQPEVYEEAPNLQAGNSLVFAHGFNVHFDQVKPPVNVDVFLVAPKGPGHLVGGAVPALFAVYQDATGVATEKALSYADGIGATRAGVLETTFKEETETDLFGEQAVLCGGVETLVDAGYQPELAYFECLHELKLIVDLMYEVTEDTKKAMGTVLQDGTFARGWIAEHKAGKPNFYATNEKENEHEIEVVGRKLRGMMPFVQPRVKAGVK........... 336
19 -11.300IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  17...................................................................................................KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSSVSEAVRTAQVVQMLLPDEQQAHVYKAEENLREGQMLLFSHGFNIHFGQINPPSYVDVAMVAPKSPGHLEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVETLTEGGYRPEIAYFECLHELKLIVDLMYETKKEMKRVLTEIQ-QGEFAKKWILENQAGRPTYNAMKKAEQNHQLEKVGEELREMMSWIHAPKELVKK........... 335
20 -9.940IDP02492 gene: proC; pyrroline-5-carboxylate reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT1559c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  9  3.....................................................................................................ICFIGGGNMAAAMIAGMTSHGYKSQDININTSTSLLNTIKLADVLILAIKPQNMFELIKNIDTVTSTQVIVTVAAGIQTSAYEELFNKEISFARTIP---PSSLGYGATGIFFNKVIAADKKDLVIDIMQTMGVVTVVEDEKEIDIVAAIASSGPFQFMEHMVEAAIKQGLDKKQAEKLVVQTCLGAAQMALNTNENMSELRKNVTSKKGITYEALNIFEQ----------FNLGGIVDKAIQANIARAQQLAIEFTKLIDN.......... 274
21 -9.700IDP90565 ketol-acid reductoisomerase [Vibrio cholerae O1 biovar eltor str. N16961] VC0162 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  38...................................................................................................KKVVIVGCGAQGLNQGLNMRDSGLDVSYALRQAAISYEQLIPTADLVINLTPDKQHTSVVNAVPLMKQGAALG-YSHGFNIVEEGMQIRKDITVVMVAPKRGFGVPTL---AVHPENDPQGEGWEIAKAWAAATGGGCLASSFVAEVKSQTILCGMLQAGSIVCYEKMVADGIDPGYAGKLLQFGWETITEALKF--GGITHMMDRLSNPAKISEELKDLMRPLYNKHMDDIISGH...................................... 311
22 -9.610IDP00140 pyrroline-5-carboxylate reductase, putative BA_0197 [Bacillus anthracis str. Ames]  ali follow..  11  5...................................................................................................HRILFIGAGRMAEAIFSGLLKTSKERARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGISPSYLEERLPGGTPVAWIMP---AAEIGKSISLYTMGQFVNETHQETLQLLLRGIG-TSQLCTEEEVHQLTAVTGSAPAFL-YYFAESLIEATKSYGVDEATAKHLVIQMISGSASMLEQTANLREQVTTPGGSTAEGLKAL..................................................... 244
23 -9.480IDP95479 S-adenosylhomocysteinase Q5CPH1 [Cryptosporidium parvum]  ali follow..  9  191....LLKNPFRWRGMLKDLYGVSEETTTGVLRLKIMESEGKLLL-----------------PAINVNDSVTKSKFDNTYGCRQSLLHGLFNGCIQMLAGKKIVVLGYGEVGKGCAQGLSGVGARVIVTEIDQVSVLEDVVSEADIFITATGNKDVITV-EHMRKMKENAYIANIGHFDDEIVYGLENYPGIKVIEVKQNVHKFTFPDTQKSVILLCKGRL------VNLGCATGHPPLVMSMSFTNQVLAQMDLWKSRELVDRSKNTRFKKLSKELDEYVARLHLDVLGIKLTKLTETQAK-YINVSINGPYKSEDYR....................................................... 494
24 -9.260IDP06299 6-phosphogluconate dehydrogenase [Streptococcus pneumoniae TIGR4] NP_344902 [Streptococcus pneumoniae TIGR4]  ali follow..  15  1................................................................................................MTKANFGVVGMAVMGRNLALNIESRGYTVAIYNRSKEKDVESFVNSIEKPRRIMLMVQAGPGTDALPHLDKGDILIDGGNTFTIRRNEELANSGINFIGT-GVSGGEKGALEGPSIMP--GGQKEAYELVADVLEEISAKVTYIGPDGAGHYVKMVNGIEYGDMQLIAESYD......................................................................................................... 203
25 -9.100IDP02226 gene: yqjI; 6-phosphogluconate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA0164 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  1................................................................................................MENLQIGVVGVGVMGKSLALNFESKGYSVALYDISKEHIVEEFVNSLESPRKILLMVNAGEITDKVPHLDKGDILIDGGNTYTIRRNKRLAEEGINFIGA-GVSGGEEGALKGPSIMP--GGQKDAYEKVKDMLENISAKVNNEPCCSY----HYVKMVHNGIEYGDMQLICEA....................................................................................................... 199
26 -9.010IDP92093 adenosylhomocysteinase, putative [Toxoplasma gondii ME49] TGME49_025050 [Toxoplasma gondii ME49]  ali follow..  13  177....LQKDPQKWSRMAANLKGVSEETTTGVHRLLQMAKKKELLF-----------------PAINVNDCVTKSKFDNVYGCRHSLPDGIMRATDVMLGGKRVVICGFGDVGKGCAAAMKGAGARVVVTEVDPICALQSQLATADIFISATGNKDIITA-RHMSQMKNNAIVGNIGHFDNEVMAGLLAWPGIQKVNIKPQVDRFIFPEDNHGVIVLAEGRL------LNLGCATGHPSFVMSCSFTNQTLAQLDLWDNVATKRYQNDVYLLPKELDE--KVARLHLPALGCELTTMSQEQAA-YVGIKPEGPYKSASYR....................................................... 476
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;