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Query: IDP00470 putative iron-sulfur cluster-binding protein YPO0367 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGMLRARPHELLPGTLRVISVRMNYLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKKLGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHTASEINFRPFVDSAPIMERSLAAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAIVAPYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFSPRAVLHTPQLLDLFAWNEEKFLRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALETRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLIRAIEKGLPRDALast
1 -143.000IDP00470 putative iron-sulfur cluster-binding protein YPO0367 [Yersinia pestis CO92]  ali  100  1MAHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGMLRARPHELLPGTLRVISVRMNYLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKKLGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHTASEINFRPFVDSAPIMERSLAAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAIVAPYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFSPRAVLHTPQLLDLFAWNEEKFLRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALETRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLIRAIEKGLPRDA 411
2 -122.000IDP91392 hypothetical protein VV1_1289 [Vibrio vulnificus CMCP6] VV1_1289 [Vibrio vulnificus CMCP6]  ali follow..  61  1....MDYQQLAQQIKQWGKELGFEKVGICDIDLTEHEAQLQKWLDAGYHGSMDWMARHGMMRARPAELLPGTVRVISVRMNYLPPQAQFAADLADPTQGYISRYALGRDYHKLVRKQLSALAKKI--------------------------------EAEVGQFGYRPFVDSAPILERPLAQKAGLGWTGKHSLILDKDAGSWFFLGELLIDLPLPVDQASEEACGKCQACITSCPTQAIVDNKVVDARRCISYLTIEHDGIIAPEFRKAIGNRIYGCDDCQLVCPWNRYADLTQQGDFHRRSPLNNASLIALFQWDEPTFLKNMEGSAIRRIGHLQWLRNIAVAMGNAPFSPQIVTALESRKGMSELLDEHINWALEEQAAQAGHFSLDVKKIVDKGLPRDAR....... 373
3 -18.600IDP00452 electron transport complex protein RnfB YPO2245 [Yersinia pestis CO92]  ali follow..  38  114.............................................................................................................................................................................................................................EANCIGCTKCIQACPVDAIIAMHTVLSDLCT------------------------GCDLCVAPCPTD........................................................................................................................... 160
4 -17.900IDP90516 gene: oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0535 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  28  15.............................................................................................................................................................................................................................EHRCKACNICVSYCPAGVLAMIEVVHPESCI------------------------GCTECEIHCP............................................................................................................................. 66
5 -17.900IDP02246 gene: rnfB; Iron-sulfur cluster-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0649c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  80.............................................................................................................................................................................................................................ESMCIGCEKCLLACPVDAIVGAHTIIEAECT------------------------GCELCVEPCPMD--ISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEYHKQRVSQTKAKQRDVYKNIATAQEIDKKAYIAASLAKFRNKKKSSPTNE....................................... 209
6 -17.800IDP06075 gene: nuoI; NADH dehydrogenase subunit I [Helicobacter pylori J99] NP_223907 [Helicobacter pylori J99]  ali follow..  16  31.....................................................................................................................................................GLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPR----YRAVHHLQRLLDSGS--------------------ERCIGCGLCEKICTSNCIIDSYTINLGRCI-------------------------CGLCAEVCPELAIVMGNRFENASTQRSQYGSKSEFLTSEQDAKNCSHAEFLGFGAVSPNYNERMQATPLDYVQEPSKEESKEESPTSPES............................................ 213
7 -17.500IDP01812 ferredoxin [Francisella tularensis subsp. tularensis SCHU S4] FTT1764c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  26  5............................................................................................................................................................................................................................VTESCIKCKDCVEVCPVDCFYEG-VINPDECI------------------------DCALCEPECPVN........................................................................................................................... 53
8 -17.000IDP06055 ferredoxin [Helicobacter pylori J99] NP_222983 [Helicobacter pylori J99]  ali follow..  23  5............................................................................................................................................................................................................................VNDECIACDACREECPSEAIEPIYSIDPDRCTE-----------------CYGYDDDEPRCVSVCPVDAILPDPNNAE................................................................................................................. 68
9 -16.500IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  21  53......................................................................................................................................................................................................................LRRYENGEERCIACKLCEVVCPALAITSSYEMDLFKCI-------------------------CGYCEESCPVDSIVETNILEYHFEERGENIMTKAKLLAIGDK............................................................................................ 146
10 -16.300IDP00453 putative iron-sulphur protein YPO2969 [Yersinia pestis CO92]  ali follow..  22  83...........................................................................................................................................................................................................IVMVNQRPALNFSTPYFSTPYCSRCQACSTACQTGALSSAEFIYCDSCADYCEKQALIWQANQPPTLVTELCDGCGECVFRCPAR........................................................................................................................... 183
11 -15.500IDP91439 ferredoxin [Vibrio vulnificus CMCP6] VV1_0471 [Vibrio vulnificus CMCP6]  ali follow..  26  6.............................................................................................................................................................................................................................TDKCINCDMCDPECPNGAISKIFEIDPNLCTECKGHYDK------------------PTCQSVCPITK.......................................................................................................................... 58
12 -14.500IDP04528 gene: napH; quinol dehydrogenase membrane component [Salmonella typhimurium LT2] STM2257_1_289 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22  203.......................................................................................................................................................................................................MGALYGVLGSKGVVTVTAKK--REKCNRCMDCFHVCPEPHVLSPAQVTHRDCMT------------------------CGRCVDVCSED........................................................................................................................... 273
13 -13.700IDP01518 formate dehydrogenase, iron-sulfur subunit VC1512 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  57................................................................................................................................................................................................................................CMHCTDCMAVCPADCFVHT-LHNKDLCI------------------------GCGYCLFACPFG-------APQFPKQAAFGERGKMDKCTFCAGGPETEPGSEEERKYGANRIAEGKLPMCASLCSTKALLAAEKISDIFRQRVVERGAKGAGWTNGEDLAYDATRS................... 202
14 -13.700IDP00983 gene: phsB; thiosulfate reductase electron transport protein STM2064 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  18............................................................................................................................................................................................IGCQACTVACKVLNDVPEGFSRVQVQIRAPEQVRVSCQHCENCVSVCPTGASYRD-QVDKSRCI------------------------GCDYCVAACPFH----------------------------------------VRYLNPQTGVADKCNFCADTRLAAGQSPACVSVCPTDALKFGRLDESEIQRWVGQKEVYRQQEARSGAVSLYRRKEVHQEGKA 192
15 -13.200IDP00930 putative hydrogenase protein STM0612 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  13............................................................................................................................................................................................IGCRGCAMACKSFNQLEPDRFWRYVYPLDKDIYPHACNHCEHCVAACPVEAYTKR-VHNPERCI------------------------GCKNCIRNCPYG........................................................................................................................... 102
16 -13.200IDP00878 putative anaerobic dimethylsulfoxide reductase subunit B STM4306 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  31  62............................................................................................................................................................................................................................LSIACNHCDECVSGCPTGAMHKR-VVDDSVCV------------------------GCRYCEMRCPYG........................................................................................................................... 112
17 -13.100IDP01006 putative anaerobic dimethylsulfoxide reductase STM2529 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  29  74............................................................................................................................................................................................................................LSISCNHCADCTKNCPTTAMHKR-RVDTDKCV------------------------GCGYCAWSCPYG........................................................................................................................... 124
18 -13.000IDP00961 gene: ttrB; tetrathionate reductase complex subunit B STM1385 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  106................................................................................................................................................................................................................................CNHCDNCVPVCPVQATFQR-VVDNKRCV------------------------GCAYCVQACPYDAR-------FINHETQTADKCTFCVHRLEAGLLPACVESCVGG-----------ARIIGDIKDPHS--RIATMLHQH----RDAIKVLKPENGTSPHVFYLGLDDAFVTPLMGRAQPALWQEV 250
19 -12.900IDP01308 iron-sulfur cluster-binding protein VC1516 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  7..........................................QQATSPNGRARQYAIEHTVELTPTVSYESGGHTLIIGPT--LIERITEPLSSMASITLLSVDGEPGTQSNLYYADTVEISGFLGA---------------FSVNVENHGKRVNLAQAAIGGNSFDIVLDMSL-LMSEEVPVPGYFPVGRGYPKLADALEE--LMGTFDKPKYFRLDP---DLCKGCERCVDACPAGALSHRIQINPYLCQ------------------------GVGTCATACPTE........................................................................................................................... 230
20 -12.700IDP93838 nrfc protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006003981 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  29  88............................................................................................................................................................................................................................YRHSCQHCDKCVDVCPTGASYRD-DVNPDLCV------------------------GCQYCIAACPYR........................................................................................................................... 138
21 -12.600IDP00543 gene: fdoH; formate dehydrogenase-O, iron-sulfur subunit YPO4057 [Yersinia pestis CO92]  ali follow..  23  98............................................................................................................................................................................................................................RKDGCMHCADCLKACPSEGAIIQ-DFQSEHCI------------------------GCGYCIAGCPFD........................................................................................................................... 148
22 -12.500IDP01082 gene: nrfC; putative formate-dependent nitrite reductase STM4279 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  31  92................................................................................................................................................................................................................................CQHCDHCVDVCPTGASFRD-DVNPDLCV------------------------GCQYCIAACPYR........................................................................................................................... 138
23 -12.300IDP02074 gene: hybA; hydrogenase 2 protein HybA [Salmonella typhimurium LT2] STM3149 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  31  108............................................................................................................................................................................................................................IKKQCMHCVDCVSVCPVSALKKD-HYDKDVCT------------------------GCRYCMVACPYN........................................................................................................................... 158
24 -11.100IDP00546 gene: frdB; fumarate reductase iron-sulfur subunit YPO0359 [Yersinia pestis CO92]  ali follow..  19  147..............................................................................................................................................................................................................................SGCINCGLCYAACPQPEFIGPAAI-----AHRYNLDNRDHGKKERMPQLKNGVWSCTFCSEVCPKH........................................................................................................................... 218
25 -10.800IDP92111 iron-sulfur subunit of succinate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_015280 [Toxoplasma gondii ME49]  ali follow..  12  1......................................................MLSSALRSVRPAASAASRRFASVAHAQTAASEAEAATKVPDFRTFAIYRYPYMQKFELDVSTCGPMILDALIAIKDRQDPSLVFRRSCREGICGSCAMNVDGKNCLACLTPIKRGDRENEAMRLMPGQDIKHDRHEEEVVVEILPLPHMMVLRDLVPDMTLKRKTPKKDECILCACCSTSCPSYWWNPQAYLGPA--AFRWIADSRDEFTEERLAAITMKLYRCHGCTVSCPKG........................................................................................................................... 297
26 -10.800IDP04683 iron-sulfur cluster-binding protein [Bacillus anthracis str. `Ames Ancestor`] GBAA3269 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  1MSVA-GELDFLKRVDK----------ALHDPQMRSAVPFTQDRLRMGREQATHELGNMEEWREAASEIRMHTIENLDSYLEQLATNVRKNAFKAEDAVSYVSEIVRKKGARSVIKSKSMVSEEIHLNKNLEEMGVKVVEYDLGEYIKEQVAELFSKEAGRKIPVDTNQLLQFAREKLRKEFLEADIGISGCNSVVLISNEGN-MGMERLVPTWKLGTAYEEVLKCIRCGACVNVCPVYRNIGGHAYGSVYSGPIGAVLAPLLEGYEELKELPFASSLCGACTDVCP-------------------VKIPLHDLLIEHRKDVVEQGFITKFEQL----AFKGFTFMVSHPFVYEKAIKMAHTGLS-ANGPGPLKGWTESRDFPKPAKQSFRDWWKKETR............. 468
27 -10.700IDP00615 gene: sdhB; succinate dehydrogenase iron-sulfur subunit SACOL1160 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  20.................................................................................................................QKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIRRNPVNIKGE------------KTTPVVWDMNCEVCGACSMVINGRMNTFPVIRDLQVDRSRMFDNLKRSKCMTCGVCLEVCPNNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNCVNACPKG........................................................................................................................... 241
28 -10.700IDP01474 fumarate reductase iron-sulfur subunit VC2657 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  1....................................................................MSAQRIQKVDILRY---------DPANDAEPHMQRFEVPFDETMSVLDAIGYVKDHLDKDLSYRWSCRMAICGSCGIMVNGVPKLACKSFLRDYPEGVKI-LANFPIEKDLIVDMTPFIERLEAIKPYIIGNDRKPEDGTNLQTPEQMARYKQFAGCINCGLCYAACPQPEFLGPAALTL---AHRYNLDSRDNGKAERMKLING-AWGCTFCSEVCPKH........................................................................................................................... 218
29 -10.100IDP02194 gene: sdhB; succinate dehydrogenase iron-sulfur subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0075 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  34.....................................................................................................................................................VLTALELIKEQDPTLALRRSCREG------VCGSDGMNINGKNRLIKVNPLPGLPVIRDLIVDMKQFYKNYEKYECILCACCTTSCPSFWWNPDKFIGPSGLLQAFIADSRDTATEQRLEDLKDPLFRCRTCVSVCPKG........................................................................................................................... 214
30 -10.100IDP01445 gene: sdhB; succinate dehydrogenase iron-sulfur subunit VC2088 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  26............................................................................................................................................EVEEGSDMMVLDALILLKEQDPSIAFRRSCREG---KNGLACITPLSALKGDKIVIRP-LPGLPVVRDLIVDMTQFYDNYAKYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYLIDSRDTATDERLSNLDD-VFRC-NCVSVCPKG........................................................................................................................... 217
31 -9.360IDP00512 electron transport complex protein RnfC YPO2244 [Yersinia pestis CO92]  ali follow..  14  128..RQRDKMALLDRIHQAGI-AGLGGAGFTASKLQGGLNGIITLIINAAECEPYITADDRLMQEHADEVITGIQVLIGIEDNKPEAIAALQRALRGQDDIHLTKYPSGGA-------------KQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAI---------KRAVIDDEPLIERVVTL-TGDA-IGTPVLYLLKLAGFKPLMGFTLPSLDVPIVKISEQSCIRCGLCVDACPAGLLPQQ-NHNLFDCIE------------------------CGACAYVCP-------------------SNIPLVQYYRQEKAEIRAL-ESARAAEAKARFEAKQARLAREKLARELRHKQAAVKLTDDQQTVDAAVSRLTRQSDGSESVINIPAAAREARKAQARARQAEKQQA 545
32 -9.300IDP01930 gene: narY; nitrate reductase 2 beta subunit [Salmonella typhimurium LT2] STM1578 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  29  179............................................................................................................................................................................................................................LPRLCEHCLSCVATCPSGAIYKR-LIDQDKCR------------------------GWRLCISGCPYK........................................................................................................................... 229
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.