current user: public
If you have questions about the server, please let us know.

Query: IDP00511 gene: mdaB; putative modulator of drug activity YPO0670 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVNSLast
1 -102.000IDP00511 gene: mdaB; putative modulator of drug activity YPO0670 [Yersinia pestis CO92]  ali  100  1MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVNS 194
2 -100.000IDP00129 gene: mdaB; NADPH-specific quinone oxidoreductase NT01ST3985 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  68  1MSNILIINGAKKFAHSNGQLNDTLTEVADGLLRDLGHQVKIVRADSDYDIKEEVQNFVWADVVIWQMPGWWMGAPWTVKKYMDDVFTEGHGTLYASDGRTRSDAAKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMDALPTFIANDVIKMPDVPRYTAEYRKHLSEIFA. 193
3 -99.800IDP00106 gene: mdaB; modulator of drug activity B NT01SF3707 [Shigella flexneri 2a str. 2457T]  ali follow..  65  1MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYNVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGSLVQDKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG. 193
4 -75.800IDP02003 glutathione-regulated potassium-efflux system ancillary protein KefG [Yersinia pestis CO92] YPO0190 [Yersinia pestis CO92]  ali follow..  18  5PPKVLLLYAHPESQDS--VANRVLLQPVQQLEHVTVHDLYAHYPDFFIDIHHEQQLLRDHQVIVFQHPLYTYSCPALLKEWLDRVLARGFANGV---------------GGHALTGKHWRSVITTGEQEGTYRIGGY--NRYPMEDILRPFELTAAMCHMHWINPMIIYWAQKPETLASHAQAYVQWLQSPLTR 181
5 -74.500IDP01886 gene: yabF; glutathione-regulated potassium-efflux system ancillary protein KefF [Salmonella typhimurium LT2] STM0085 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  23  2...ILIIYAHPYPHHS--HANKRMLEQAGTLENVEIRSLYHLYPDFNIDVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVLTHGWAYGH---------------GGTALHGKHLLWAVTTGGGENHFAIGSH----PGFDVLSQPLQATALYCGLKWLSPFAMHCTCDDDTLQAQARQYKQRLLAWQEV 173
6 -73.800IDP01979 gene: yheR; glutathione-regulated potassium-efflux system ancillary protein KefG [Salmonella typhimurium LT2] STM3458 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  20  4PAKVLLLYAHPESQDS--VANRVLLKPAIQHNNVTVHDLYARYPDFFIDTPYEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGP---------------GGNQLVGKYWRSVITTGEPESAYRYDAL--NRYPMSDVLRPFELTAAMCRMHWMPPIIVYWAQSPQTLASHAKAYGEWLANPVSA 180
7 -44.700IDP02263 hypothetical protein GBAA0966 [Bacillus anthracis str. `Ames Ancestor`] GBAA0966 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  1MNKTLIINAHPKVDDTS-SVSIKVFKHFLESYKELNETIEQINLYDD-RMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSV----------GLLKDGRRMLVIQASGGIYTNDDW------YTDVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDP-TEVLQNAYKEVEEAASR 209
8 -42.300IDP04320 gene: acpD; acyl carrier protein phosphodiesterase [Yersinia pestis CO92] YPO2323 [Yersinia pestis CO92]  ali follow..  17  1MSKVLVLKSSILATSS---QSNQLADFFVEQWQAAHAGDQITVRDLAAQSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDMIARAGVTFRYTEKGPE-----------GLVTGKRAIILTSRGG----------IHKDTPTDLVVPYLRLFLGFIGITDVEFVFAEGIAYGPEATKAQADAKTLLAQVVAA 201
9 -41.300IDP04035 azoreductase [Bacillus anthracis str. Sterne] BAS5262 [Bacillus anthracis str. Sterne]  ali follow..  19  1MTKVLFVKANN--RPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPV-----------GLIGDKKIALLNARGGVYSEGPAAE-------VEMAVKYVASMMGFFGATNMETVVIEGHNQFPDAEEIITAGLEEAAKVANK 207
10 -20.900IDP00950 gene: wraB; TrpR binding protein WrbA STM1119 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  1MAKILVLY------YSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQT--------------------GGLWASGSLYGKLGSVFSSTGT................................................................... 116
11 -18.300IDP95068 azoreductase [Clostridium perfringens B str. ATCC 3626] AGH15624 [Clostridium perfringens B str. ATCC 3626]  ali follow..  12  2..KVLLVNGSPNKEGC----TYTALKEVSKTLEENGIDTEIFQVGNKDGVNEFVEKAKDADGFVFGSPVYYAAASGSITSFLDRAFYS---------------------GGKHMAFKPGAVICSARRAGT--------------TSTLDQLSKYLTICNMPVVSSQYWEKVKKDLEGMQTMRVLGRNMAWLIKC 182
12 -9.570IDP01446 flavodoxin FldA VC2099 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  1MASVGIFFG------SDTGNTEAIAKMIQKQLGKKLVHVQDIA-------KSSKEDINNFDLLLLGIPTWYYGAQCDWDDFFPELEAID------------------------FSTKLVAI----------FGCGDQEDYAEYFCDAMGTVRDIIQAKGATIVGHWPTEGYEFEASKALVDENHFVGL...... 142
13 -9.210IDP91026 flavodoxin [Yersinia pestis KIM 10] y3142 [Yersinia pestis KIM10+]  ali follow..  16  1MAQVGIFVG------TVYGNALLVAEEAENILKDQGHEVKLFDEG-----TLEDWQHYRQHYVLVITSTTGQGFPDSIASLFVAVRD----------------------QVGFQPELRYGVIALGDSSYDNFCGAGRT------------FDELLQEQGATRIGERLEIDAIEHSEPEAISAPWVEQWGRLLQ. 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.