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Query: IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGMQSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQVYAEHYPIVGKNLLKAIQDVTGLEENDPVIQAWAKAYGVIADVFIQIEKEIYDQMMWIGFKPFKITNIKQESEDIKSFTVETEEYDFSEFTPGQYITVDVSSDKLPYRAKRHYSIVSGEKNHLTFGVKRDVTTEHEGEVSTILHDEIKEGDMINLAAPVGGFVLENTTEPQLFLGSGIGVTPLVAMYEAASAKGLDTQMVQVAENEQHLPFKDNFNSIASHHDNAKLYTHLKDKQGYIGAEELQVFLANKPEIYICGGTKFLQSMIEALKSLNYDMDRVHYETFIPRLSVAVLast
1 -126.000IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL]  ali  100  1MLTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGMQSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQVYAEHYPIVGKNLLKAIQDVTGLEENDPVIQAWAKAYGVIADVFIQIEKEIYDQMMWIGFKPFKITNIKQESEDIKSFTVETEEYDFSEFTPGQYITVDVSSDKLPYRAKRHYSIVSGEKNHLTFGVKRDVTTEHEGEVSTILHDEIKEGDMINLAAPVGGFVLENTTEPQLFLGSGIGVTPLVAMYEAASAKGLDTQMVQVAENEQHLPFKDNFNSIASHHDNAKLYTHLKDKQGYIGAEELQVFLANKPEIYICGGTKFLQSMIEALKSLNYDMDRVHYETFIPRLSVAV 381
2 -112.000IDP01484 nitric oxide dioxygenase VCA0183 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  31  1MLTQEHINIIKSTIPLLESAGPALTQHFYQRMFSHNPELKHIFNMTHQKTGRQSVALFEAIAAYAKHIDNLAALTSAVERIAHKHTSFNIQPEHYQIVGHHLLETLRELAPDAFTQPVEEAWTAAYFFLAQVFIDREGALYALGGWRDGRTFVVREKQVESAYVTSFVLVPDGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNGRYRISVKREVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYVERERPVVLISAGVGATPMQAILHTLAKQNSGVTYLYACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESQGEMQLAEL-ILPIEDGDFYLCGPIGFMQYVVKQLLALGVDKARIHYEVFGPHAQLAA 394
3 -108.000IDP00562 gene: hmp; nitric oxide dioxygenase YPO2908 [Yersinia pestis CO92]  ali follow..  34  1MLDTQTIAIVKSTIPLLAATGPKLTAHFYERMFKHHPELKNIFNMSNQSSGDQREALFNAICAYATNIENLAALLPTVERIAQKHTSLNIQPEHYPIVGEHLIATLDELFSP--GQAVLDAWAKAYGVLADVFIQRESQIYQQGGWRTLRRFRIIKKEQQSEVICSFVLAPDGGQVLHYKPGQYLGIYIEHESLEFQEIRQYSLTTAPNGK---TYRIAVKREEQGTVSNLLHRELNEGDIVRIAPPRGDFFLDSPDTPVALISAGVGQTPMLSMLNTLYSQQAPVHWLHAAENGRVHAFADEVSAIAAKMPNLSRHVWYREPQGLMDLSSYQWLADPKRHYYFCGPLPFMQFIGRQLLAQGIAPEQIHYECFGPHKVI.. 396
4 -50.800IDP01074 gene: fpr; ferredoxin-NADP reductase STM4084 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  2..................................................................................................................................................ADWVTGKVTKVQNWTDALFSLTVHAPI---NPFTAGQFTKLGLEIDGE--RVQRAYSYVNAPDNP---NLEFYLVTVPQGKLSPRLAA-LKPGDEVQVVSDASGFFVLDECETLWMLATGTAIGPYLSILQYGQDVAKNLVLVHAARFAADLSYLPLMLELQQRYEGLRIQTVVSRENGRVPALIENGELKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAE... 245
5 -50.300IDP01319 gene: fre; FMN reductase VC0312 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  4......................................................................................................................................................QCQVKSVQPLATHTYQILLQPEHA--VAYQAGQYLMVVMG-----EKDKRPFSLASSPCRSNG-ELELHIGAADHSAFAHQVVEKFQQAHLVEVDVPHGNAALQESERPLLLIAGGTGFSYVRSILDHCLSQGQPIYLYWGARDAAQLYALNELQELAKQHAHLQVVPVVEQAQGNVLQAINNDFASEAFDIYIAGRFEMAGAAREQFQNKQARRDRMFADAYA....... 234
6 -49.900IDP91897 oxidoreductase, NAD-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007685 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  15  2.....................KSVKGLLFIIASFILTLLTWMNTSPQFMIPGLALTSLSLTFILATRLPLLESWFHGLEKVYTVHKFTAFLSIILLIFHNFSMGGLWGSRLAAQFGNLAEAWRWIHRLVYLAYILG--IIFLYQKISFPYLGKITHLKRLNHDTREIQIHLCRP--FNYQSGQFAFLKIFQEGFESAP-HPFSISGGHGQTLYFTVKNS------GDHTNNIYDNLQAGSKVTLDRAYGHMIIEEGRENQVWIAGGIGITPFISYIREHPILDKQVHFYYSFRGDENAVYLDLLRNYAQKNPNFELHLIDSTKDGYLNFEQKEVP--EHATVYMCGPISMMKALAKQIKKQNPK-TELIYEGFK....... 394
7 -46.800IDP04140 gene: ascD; cdp-6-deoxy-delta-3,4-glucoseen reductase [Yersinia pestis CO92] YPO3116 [Yersinia pestis CO92]  ali follow..  17  15..................................................................TSDGTSTILDAALDSN--HIEYSCKDGTCGSCKAILISGEVDSAENTFLTEEDVAKGAILTCCSDIELDVNYYPELSHIQKKTYPCKLDSIEFIGEDIAILSLRLPPTAKIQYLAGQYIDLIIN------GQRRSYSIANAPGGN---NIELHVRKVVNGVFSNIIFNELKLQQLLRIEGPQGTFFVREDNLPIVFLAGGTGFAPVKSMVEALINKNRQVHIYWGMPAGHNF-YSDIANEWAIKHPNIHYVPVVSGDDGFVHQAVLEDIPDSLFNVYACGSLAMITAARNDFINHGLAENKFFSDAFVPSK.... 329
8 -28.600IDP01841 gene: asrB; anaerobic sulfite reductase subunit B [Salmonella typhimurium LT2] STM2549 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  17.....................................................................................................................................................AAYRILSITRHTPLEWNFRVAVD----FPAHWGQFVEVSLPRVGE-----APISVSDYGDGWIDLLIRNV------GKVTSALF-TLKEGDNVWLRGCYGNYPVDTRHKPLLVVAGGTGVAPVKGLMRYFVENPGQLDMILGYKNRDCVLYKEEMATWRGKHN-LTLDEGEADDRYQIGRVTMTLSDIDTMQAIVVGPPIMITFTVKMLLQKGLKPEQIWVDY......... 234
9 -26.100IDP04424 gene: pyrK; dihydroorotate dehydrogenase electron transfer subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA4024 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  18  6......................................................................................................................................................NMIVVNQKEIAKNIYELVLQGTL--QQMNEPGQFVHIKVA-EGIAPLLRRPISICNVDQEKNEFTMLYRAE----GQGTKTL-ATRKQGEMVDVLGPLGHFPVEEAGQTALLVGGGIGVPPLYELSQRLVAKGVRVIHILGFQTKDVVFYEEKFAELGDTY--VATVDGTHGTKGFVT-DVIDHYGIDFDILYSCGPLAMLRALEGRYKEK.................... 209
10 -20.100IDP95246 acinetobactin utilization protein [Acinetobacter baumannii ATCC 17978] YP_001085413 [Acinetobacter baumannii ATCC 17978]  ali follow..  11  4.....................................................................................................................................................LEMTIVSIQTPYPSIVRIQGKINTQPELWQAPNLAIRLIVSNPPEGQPISRVYTVRSFNPINAQIEIDF-VKHEDLSPAMEWL-NSAQVGTKIGLIGPRPHFIPNFTAKKHVVMFADDTAVPALYSILKQWELGISADIFIESFEKDI---ASQLPELEHVKIHSFHKEHHTSQKGLLLKAAFALEHYENITIWAACERNEARALRQFFLDQQLNKNDVRIAGY........ 224
11 -15.100IDP02581 gene: cysJ; sulfite reductase subunit alpha [Yersinia pestis CO92] YPO3372 [Yersinia pestis CO92]  ali follow..  17  378........................................................................................................................................................................................LNADQLVGLLRPLTPRLYSIASSQENEVHITVGVVRYDIDGGGASGYLADRLEVDGDIRV-EHNDNFRLPANETPVIMIGPGTGIAPFRAFMQQREVDGAKNWLFFGNPHFTDFLYQVEWQRYVKEGVLTRIDLAWSRDQAH-QGAELWNWIQQGAHIYVCGDANRMKDVEQVLLDVVALHGAMDAE.......... 586

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.