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Query: IDP00666 TrkA potassium uptake family protein SACOL1096 [Staphylococcus aureus subsp. aureus COL], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATRLast
1 -83.100IDP00666 TrkA potassium uptake family protein SACOL1096 [Staphylococcus aureus subsp. aureus COL]  ali  100  1MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR 220
2 -79.800IDP01104 potassium uptake protein, TrkA family BA_4191 [Bacillus anthracis str. Ames]  ali follow..  66  4KEKEFAVIGLGRFGGSICRELAQLGMEVMAIDSDEDKINEFANIASHAVIADSTDEMVLKSLGIRNFDHVVVAIGDNLNSSILTTLILKELGVKNITVKAQNDYHEKVLSKIGADHIVHPERDMGKRIANNIASSNVLDYLELSDEHSIVEIIANKKIDGHSLIELDIRAKFGLNIVAIKRGKEVIVSPRATENIQAGDILIVIGHDDEVDRFKHFLR.. 221
3 -76.000IDP91958 Trk family potassium uptake protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004562 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  33  3.DRTIGILGLGIFGSSVLAALAKQDMNIIAIDDHAERINQFEPVLARGVIGDITDEELLRSAGIDTCDTVVVATGENLESSVLAVMHCKSLGVPTVIAKVKSQTAKKVLEKIGADSVISPEYEMGQSLAQTILFHNSVDVFQLDKNVSIVEMKIPQSWAGQSLSKLDLRGKYNLNILGFRENSPLDVEFGPDDLLKADTYILAVINNQYLDTLVALNS.. 221
4 -29.100IDP02155 gene: trkA; potassium transporter peripheral membrane component [Yersinia pestis CO92] YPO0239 [Yersinia pestis CO92]  ali follow..  15  2...KIIILGAGQVGGTLAENLVGENNDITVVDIDSGRLRQLQDKFLRVVQGYGSHPRVLREAGAEDADMLVAVTNSDETNMIACQIAYSLFNTPNRIARIRSTEYIREADKVPIDHLISPEQLVIDYIYKLIEYPGALQVVNFAEGIAAVKAYYGGPLVGNALSSLREHMHIDTRVAAIFRQDRPIR-PQGSTIIEAGDEVFFVAASQHIRAVMSELQRL 228
5 -29.000IDP91398 gene: trkA; potassium transporter peripheral membrane component [Vibrio vulnificus CMCP6] VV1_1045 [Vibrio vulnificus CMCP6]  ali follow..  16  2...KIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEELVAVKAYYGGPLVGNALSALREHMHIDTRVAAIFRQGRPIR-PQGTTIIEADDEVFFVAASNHIRSVMSELQRL 228
6 -12.500IDP01907 gene: solA; N-methyltryptophan oxidase [Salmonella typhimurium LT2] STM1160 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  1MKYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYVPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPAD---SAFLANVARSAQQWQLNVERLDATALMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWL--RLAREAGCAQLFNSPVSHIHHDDNGVTIETSEGCYHASKALISAGT.............. 201
7 -11.100IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  17..KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEA---------VRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHG...................................................................................................................... 107
8 -11.100IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  17.EKKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSWDKAKEDGFSVYTVAEA---------AKQADVVMILLPDELQPEVYEEEIAPNLGNSLVFAHGFNVHFDQVKPPVNVDVFLVAPKGPGHLVRRTFSEPALFAVYQDATGVATEKALSYADGIGATRAGVLETTFKEETETDLFGEQAVLCGGVTALVKAGFETLVDAGYQPEL.......... 222
9 -10.700IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  18.SKKVAIIGFGSQGHAHAMNLRDNGVNVTIGLREGSVSAVKAKN-------AGFEVVSVSEA-SKIADVIMILAPDEIQADIFNVEIKPNLGKAIAFAHGFNIHYGQIVVPKGVDVIM...................................................................................................... 128
10 -10.600IDP00503 gene: fadB; multifunctional fatty acid oxidation complex subunit alpha YPO3766 [Yersinia pestis CO92]  ali follow..  17  314..KLAAVLGAGIMGGGIAYQSALKSVPVIMKDINENSLDLGMNEAAKLLNKQLERGKVDGLAGIERAQVIVEAVVENPKKAAVLAEVEALIGEDTVLASNTSTIPIDQL----AKSLKRPENFCG------------MHFFNPVHRMPLVEIIRGAKTSDKTLAAVAYATQMGKTPIVVNDCPGFFVNRVLFPYLAGFGMLVRDG............... 517
11 -10.400IDP05101 gene: hbd; 3-hydroxybutyryl-CoA dehydrogenase [Clostridium difficile 630] CD1058 [Peptoclostridium difficile 630]  ali follow..  12  2...KLAVIGSGTMGSGIVQTFASCGHDVCLKSRTQGAIDKCLALLDKNLMDEATKAEILSHVDLKDMDLIIEASVEDMNIKKDVFKLLDELKEDTILATNTSSLSITEI----ASSTKRPDKVIG------------MHFFNPVPMMKLVEVISGQLTSKVTFDTVELSKSINKVPVDVSESPGFVVNRILIPMINEAVGIYADG............... 204
12 -10.400IDP01944 putative sugar-nucleotide epimerase/dehydratease [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1427c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  1MSKKVLITGAGYIGSVLTPILLEKGYEVCVIDNQISLLSCFHNKNFTFINGDAMDENLIRQE-VAKADIIILAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGI.............................................................................................. 146
13 -10.100IDP06313 hypothetical protein SP_1627 [Streptococcus pneumoniae TIGR4] NP_346067 [Streptococcus pneumoniae TIGR4]  ali follow..  22  2...KLAVIA-GQAGKAIVEEAVKRGHEVTAIVRSENKSQAES-----IIKKDLFEL---TKDDLTGFDAVISAFGAYTPDTLPLHSK-----SIELFNQLLAGTQTRFLVVGGAGSLYIDE................................................................................................... 107
14 -9.460IDP00999 gene: fadJ; multifunctional fatty acid oxidation complex subunit alpha STM2388 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  310..SVGILGGGLMGGGIAWVTACKGGLPVRIKDINTQGINHALKYSWDLLETKVRRRHIKASRGFSHRDLVIEAVFEDLPKQQMVAEVEQNCAAHTIFASNTSSLPIGDI----AANAARPEQVIG------------LHFFSPVEKMPLVEVIPHASTSAQTIATVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGRVEHIDAALVKFG.. 527
15 -9.370IDP00208 putative dehydrogenase YPO1979 [Yersinia pestis CO92]  ali follow..  13  2...KVLVTG-SGLGRNAAQWLLEAGHEVYAIGRDQLAGEELRKLGATFIPLDLTMTTM----------EVCQQWLKTCDVVWHCAAKSAPWGNPQDFHQTNVVVTHKLAQREGVKRFIH--------ISSPAVYFDFRHHHDLPETYRASRFSSHSKYAAEQVLHECIAHYPDTTYVILR----------PRGLFGPHDRVIV................. 180
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.